Pairwise Alignments

Query, 713 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2

Subject, 683 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  228 bits (582), Expect = 6e-64
 Identities = 210/631 (33%), Positives = 283/631 (44%), Gaps = 46/631 (7%)

Query: 96  PEFAQALYNLGNALEAQGRLEEAATAFRQAAARRPGYARARFNLGNVLAALDRRADADDA 155
           PE A A  NLG  L  QGRL EA    R+A    P +    +N G  L AL R A+A  A
Sbjct: 49  PEEAVARSNLGETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQALGRPAEAAAA 108

Query: 156 YRAALADDPTFVEAHANRGALLLALERPREAAADLSRALALRPDHA--PALSNLAAARLA 213
           Y  A    P F  A  N+G LL  L R  EA A L RAL L  DHA  PA   LAA    
Sbjct: 109 YGEAARLMPGFAPAPCNQGVLLRELGRLDEAEAALRRALEL--DHALVPARLALAALHRD 166

Query: 214 LGDRDGAELAARHAVAARPDLADCLLRLG-EVRQRADRLGAAADAYRTALAWNPA----L 268
            GD D A    R  ++  PDLA+    L   +++R  R G A DA  + + ++ A    L
Sbjct: 167 RGDLDRAAAGFRACLSLMPDLAEGQANLALALKERGQRGGPAEDAAASIVGFDRALRIGL 226

Query: 269 AEAQANLA-LVRQGQGLLDAAEAGNRRALALDPTLADVRSNLAY-LLLFRPGVTAA---A 323
            +A   LA LV+Q + L   A  G   A  +D  + + R+  AY  ++   G   A   A
Sbjct: 227 PDAGGVLAQLVQQRRHLCRWAGLGALSARLVD-LVREGRTQQAYPWIVLGEGAGPALERA 285

Query: 324 VLEAHRDWDRVHGAPHRGRWVKPG--KAGARKGPLTVAILSGDFRRHPAGLFALRTVEAL 381
             E +  W        + R ++PG  K   R   L +  LS DF  H     A+   E +
Sbjct: 286 CAERYSGW--------KTRGIRPGFPKRTDRGAKLRIGYLSTDFHEHAT---AVLIAELI 334

Query: 382 PGHDIRLLLYANQSESDDVTGRFRKAAA----QWTAVAGLTDAELAARIRHDR-PDVLID 436
             HD         S   D  G  RK       +   ++ LTD E AAR+ H+   D+L+D
Sbjct: 335 ERHDRDRFEIIGCSYGPDDGGPLRKRLVAGFDRLLDLSALTD-EAAARLIHEAGVDILVD 393

Query: 437 LAGHNARGRPGVFARKPAPVQVAWSGYMATTGLAAMDALVADRHHVPDGMEAFYAERVLR 496
           L GH    RPG+ A +PAPVQ  W GY  T G  A+D ++AD    P   + FY ER++ 
Sbjct: 394 LKGHTQNARPGIAAYRPAPVQAQWLGYPGTLGSTAIDYVIADAVVAPADHQRFYCERIVH 453

Query: 497 MPDAFIAYDPPDVE-ELPLTPPPCLSGGPV---TFGSFNILTKLNDGVLAAWAAILGRAP 552
           +PD   +Y P D +  +  TP     G P     F +FN   K+   +   W  IL R P
Sbjct: 454 LPD---SYQPNDRQRSIGPTPGRADCGLPAEGFVFCAFNAPYKIGPDLFGRWCRILQRVP 510

Query: 553 GSRLLMKTKALSCP-DTAALWRGRLAAAGIDPGRVTMVGATGSLDHMRWCASVDVALDPF 611
           GS L +    L  P + AA  RG  A  G+ P R+          H+      D+ LD  
Sbjct: 511 GSVLWL----LDGPAEVAANLRGAAAERGVAPERLIFAPRLPGPAHLARHRLADLFLDSA 566

Query: 612 PFSGSTTTLETLWMGVPVVTLPGETFSSRHSLAFLTVAGVEGCIAADPADYVERAVAWAA 671
           P    TT  + LW G+PV+++PG +F+ R + + L   G+     AD   Y   A   A 
Sbjct: 567 PVGAHTTASDALWAGLPVLSVPGRSFAGRVAASLLRAVGLPKLAVADWDAYEATAQRLAE 626

Query: 672 DRQGLADLRRTLRTRMAAGPLCDGGKLAAAL 702
               LA L+  L    A  PL D  + A ++
Sbjct: 627 QPAELAALKLRLEQACATAPLFDTDRFARSI 657



 Score = 46.2 bits (108), Expect = 5e-09
 Identities = 54/177 (30%), Positives = 63/177 (35%), Gaps = 46/177 (25%)

Query: 181 ERPREAAADLSRALALRPDHAPALSNLAAARLALGDRDGAELAARHAVAARPDLADCLLR 240
           E  + A ADL R LA +   A  LS L AA   LG             A  P+ A     
Sbjct: 10  ESDKGAIADLRRRLAGKAGDAALLSALFAALDTLGQ------------AGTPEEAVARSN 57

Query: 241 LGEVRQRADRLGAAADAYRTALAW----------------------------------NP 266
           LGE  +R  RL  A   +R AL W                                   P
Sbjct: 58  LGETLRRQGRLAEAEAHHRKALDWLPDFGGNHYNWGVTLQALGRPAEAAAAYGEAARLMP 117

Query: 267 ALAEAQANLALVRQGQGLLDAAEAGNRRALALDPTLADVRSNLAYLLLFRPGVTAAA 323
             A A  N  ++ +  G LD AEA  RRAL LD  L   R  LA L   R  +  AA
Sbjct: 118 GFAPAPCNQGVLLRELGRLDEAEAALRRALELDHALVPARLALAALHRDRGDLDRAA 174



 Score = 30.8 bits (68), Expect = 2e-04
 Identities = 22/72 (30%), Positives = 30/72 (41%)

Query: 9   QAGRLGEAAALYHAVLDALPGHADAAHLLGVVHLQSGQPDRAVSLIRGAIQHNHRVADYH 68
           + GRL EA A     L+       A   L  +H   G  DRA +  R  +     +A+  
Sbjct: 132 ELGRLDEAEAALRRALELDHALVPARLALAALHRDRGDLDRAAAGFRACLSLMPDLAEGQ 191

Query: 69  DNLGSALKALGR 80
            NL  ALK  G+
Sbjct: 192 ANLALALKERGQ 203