Pairwise Alignments
Query, 575 a.a., hypothetical protein from Azospirillum sp. SherDot2
Subject, 681 a.a., HAMP domain-containing protein from Magnetospirillum magneticum AMB-1
Score = 254 bits (648), Expect = 1e-71
Identities = 154/362 (42%), Positives = 212/362 (58%), Gaps = 5/362 (1%)
Query: 213 LLVAIAGLFLWFTHHRIVR-----PLARLAAHMQRLAGGDLDGAVPLVGRRDEIGAMAGT 267
++ I GL + F I+ P+A + M RLA GD +V V E G MA
Sbjct: 313 IIAVIGGLGITFAAAGILAKGITGPIAHITNAMSRLATGDTAISVEGVDLPTEEGEMARA 372
Query: 268 VEVFRDGLVRLRAAGDRERAEAEEARRRQEALERNLRSFEAEIGTLAAALAGRAGTLHRT 327
V+VFR+ + ++AE E RR++A+ER +F E+ AA+ L+ +
Sbjct: 373 VQVFRNNHLAAEKLAAEQKAEQEAKERRRQAIERLTAAFRQEVSGALAAVGDATRLLNNS 432
Query: 328 GQDLASSSSRTIGSTQEVSAAAARTAGTVQAVAAATEELSASIAGIGQRVQGSVAMTTAA 387
L SS+ G V+AAA + V+ VA A EELSASI I ++V S ++ A
Sbjct: 433 ANSLGSSAQSMEGHAAAVAAAAEEASINVETVAGAAEELSASINEISRQVATSAQVSKQA 492
Query: 388 VEQADRSSATVASLAEAVQRIGEVVGLINAIASQTNLLALNATIEAARAGEAGKGFAVVA 447
V +A+R++A V LA+A + IGEVV +I IA QTNLLALNATIEAARAGEAGKGFAVVA
Sbjct: 493 VAEAERTNALVHGLADAARNIGEVVTMIGDIAGQTNLLALNATIEAARAGEAGKGFAVVA 552
Query: 448 QEVKNLANQTARATEDITQQIATIRSATDGAVDAIQGIGGSLGQVCRMAQEIADAVTQQD 507
EVK+LA QTARAT IT+Q+ +++ATD AV AIQGIG + ++ ++ IA AV +QD
Sbjct: 553 NEVKHLATQTARATSQITEQVGAVQAATDQAVTAIQGIGAIIERINEVSSAIAAAVEEQD 612
Query: 508 EATREIARNIQETAGAAGAVSAAISEVAQAAEQAGMVAESMFSSAQSLGSETKRLEGAAH 567
TR+IARN+ E AG VS +S+V A + G A + + +LGS++ L +
Sbjct: 613 ATTRDIARNVAEAAGGTREVSRHVSDVTSEAGETGKTATDVLGAVTALGSQSDALNTSVQ 672
Query: 568 SF 569
F
Sbjct: 673 RF 674
Score = 46.2 bits (108), Expect = 4e-09
Identities = 77/368 (20%), Positives = 142/368 (38%), Gaps = 65/368 (17%)
Query: 119 GELSVAEEKALDSIAAAMAQMDSKLTEAEAAVAAHTPLDRLARTAALDTAPAVAAMRTLN 178
GE++ A + ++ AA + E EA ++RL + + A+AA+
Sbjct: 367 GEMARAVQVFRNNHLAAEKLAAEQKAEQEAKERRRQAIERLTAAFRQEVSGALAAVGDAT 426
Query: 179 GELTRARAALGEANRQGIAGLTGTVLTGGSVALVLLVAIAGLFLWFTHHRIVRPLARLAA 238
L + +LG ++ Q + G V A + + +AG
Sbjct: 427 RLLNNSANSLG-SSAQSMEGHAAAVAAAAEEASINVETVAG------------------- 466
Query: 239 HMQRLAGGDLDGAVPLVGRRDEIGAMAGTVEVFRDGLVRLRAAGDRERAEAEEARRRQEA 298
A +L ++ + R+ +A + +V + + A+ AR E
Sbjct: 467 -----AAEELSASINEISRQ-----VATSAQVSKQAVAEAERTNALVHGLADAARNIGEV 516
Query: 299 L--------ERNLRSFEAEIGTLAAALAGRAGTLHRTGQDLASSSSRTIGSTQEVSAAAA 350
+ + NL + A T+ AA AG AG + A ++ + + A +
Sbjct: 517 VTMIGDIAGQTNLLALNA---TIEAARAGEAG------KGFAVVANEVKHLATQTARATS 567
Query: 351 RTAGTVQAVAAATEELSASIAGIG---QRVQGSVAMTTAAVEQADRSSATVA-SLAEAVQ 406
+ V AV AAT++ +I GIG +R+ + AAVE+ D ++ +A ++AEA
Sbjct: 568 QITEQVGAVQAATDQAVTAIQGIGAIIERINEVSSAIAAAVEEQDATTRDIARNVAEAAG 627
Query: 407 RIGEVVGLINAIASQTNLLALNATIEAARAGEAGKGFAVVAQEVKNLANQTARATEDITQ 466
EV ++ + S+ AGE GK V V L +Q+ + +
Sbjct: 628 GTREVSRHVSDVTSE--------------AGETGKTATDVLGAVTALGSQSDALNTSVQR 673
Query: 467 QIATIRSA 474
+A + +A
Sbjct: 674 FLAGVETA 681
Score = 28.9 bits (63), Expect = 7e-04
Identities = 34/142 (23%), Positives = 53/142 (37%), Gaps = 7/142 (4%)
Query: 431 IEAARAGEAGKGFAVVAQEVKNLANQTARATEDITQQIATIRSATDGAVDAIQGIGGSLG 490
I A AG KG + N ++ A I+ + + + A+Q +
Sbjct: 322 ITFAAAGILAKGITGPIAHITNAMSRLATGDTAISVEGVDLPTEEGEMARAVQVFRNN-- 379
Query: 491 QVCRMAQEIADAVTQQDEATREIARNIQE--TAGAAGAVSAAISEVAQAAEQAGMVAESM 548
+A E A + ++ +E R E TA VS A++ V A A S+
Sbjct: 380 ---HLAAEKLAAEQKAEQEAKERRRQAIERLTAAFRQEVSGALAAVGDATRLLNNSANSL 436
Query: 549 FSSAQSLGSETKRLEGAAHSFS 570
SSAQS+ + AA S
Sbjct: 437 GSSAQSMEGHAAAVAAAAEEAS 458
Score = 27.7 bits (60), Expect = 0.002
Identities = 36/145 (24%), Positives = 58/145 (40%), Gaps = 18/145 (12%)
Query: 437 GEAGKGFAVVAQEVKNLANQTARATEDITQQIATIRSATDGAVDAIQGIG-----GSLG- 490
G G FA K + A T A R AT +++G+ G +
Sbjct: 318 GGLGITFAAAGILAKGITGPIAHITN------AMSRLATGDTAISVEGVDLPTEEGEMAR 371
Query: 491 --QVCRMAQEIADAVTQQDEATREIARNIQETAGAAGAVSAAI-SEVAQAAEQAGMVAES 547
QV R A+ + + +A +E ++ A ++AA EV+ A G
Sbjct: 372 AVQVFRNNHLAAEKLAAEQKAEQEAKERRRQ---AIERLTAAFRQEVSGALAAVGDATRL 428
Query: 548 MFSSAQSLGSETKRLEGAAHSFSQA 572
+ +SA SLGS + +EG A + + A
Sbjct: 429 LNNSANSLGSSAQSMEGHAAAVAAA 453