Pairwise Alignments

Query, 1274 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 950 a.a., PAS domain-containing protein from Bosea sp. OAE506

 Score =  268 bits (684), Expect = 2e-75
 Identities = 164/386 (42%), Positives = 229/386 (59%), Gaps = 11/386 (2%)

Query: 891  ERAATLRKTEEQLRQSQKMEAVGQLTGGMAHDFNNLLQAMSSCLQLVSRRVGHAPEVEPI 950
            E  A   K E+ LRQ+QKMEAVGQLTGG+AHDFNNLL  + S  +L+ +           
Sbjct: 561  EEVAERAKAEDALRQAQKMEAVGQLTGGVAHDFNNLLTIIKSSTELLRKPNLADERRRRY 620

Query: 951  LDAGRQAVDRGASLIRQLMAFSRRQSLQPEAFDVRDRLLGLRLFLDRALRADIGLEFALQ 1010
            +DA    VDR A L  QL+AF+RRQ L+PE F+   R+  +   L   + + I +   L 
Sbjct: 621  IDAISDTVDRAAKLTGQLLAFARRQPLKPEVFEPSARVGAVAEMLRSIVGSRIEIVADLH 680

Query: 1011 GGLWPVMADPVQFDLAVLNLATNARDAIDADGAVVVGADNVV----LDGMDGLSGEFLKV 1066
                 + AD  QF+ A++N+A NARDA+D +G + +  D+V     + G  G+ GEF+ +
Sbjct: 681  AVDCWIEADISQFETALVNMAVNARDAMDGEGTLTITVDDVARIPQIRGHVGVPGEFVAI 740

Query: 1067 FVRDSGRGIAPDALGRVFEPFFTTKAVGKGTGLGLAQVYGFCRQSGGTATVESVEGKGTV 1126
             + D+G GI P+ L ++FEPF+TTK VGKGTGLGL+QV+GF +QSGG   V+S  G G+ 
Sbjct: 741  SMEDTGAGIPPERLMQIFEPFYTTKDVGKGTGLGLSQVFGFAKQSGGDIDVQSALGSGSR 800

Query: 1127 VSLLLPRAEATVASETPNAPPVLPSAA---DIHVLLVEDDPVVAPVVTAALEDLGYRVTR 1183
             +L LPRA+       P    V  S A      VL+VED+  V    T  L DLGY    
Sbjct: 801  FTLYLPRAKPVSLEVAPLETSVSASIAGGKGKRVLVVEDNIDVGTFSTQLLGDLGYETMW 860

Query: 1184 AATGEEALRRL-EEAAVDLLFSDVVMPGSINGVALAQEARQRWPDLGILLTTGYSEDLA- 1241
            AA G+EAL+ L ++ + D +FSDVVMPG + GV L  E R+++P L ++LT+GYS  LA 
Sbjct: 861  AANGQEALKLLTDDDSFDAVFSDVVMPG-MGGVELGLEIRKKYPGLPVVLTSGYSHVLAE 919

Query: 1242 -ATKSVRVLSKPYRIEDLAHAIQEEL 1266
                   +L KPY +EDL+  ++  +
Sbjct: 920  EGRHGFDLLQKPYAVEDLSRILRSAM 945



 Score = 83.2 bits (204), Expect = 1e-19
 Identities = 116/480 (24%), Positives = 189/480 (39%), Gaps = 100/480 (20%)

Query: 315 ERAAGHIATAI--TNAEAYEE---------ERRRAEMLAELDRAKTAF------------ 351
           ER    + TAI  T  +A EE         ERR AE +AE  +A+ A             
Sbjct: 526 ERCVRLLGTAIDITARKAIEERISDLNETLERRVAEEVAERAKAEDALRQAQKMEAVGQL 585

Query: 352 FSNASHEFRTPLTLMLGPVEDMLQRSPAEDRAAVPVERDALELVHRNGQRLLRLVNALLD 411
               +H+F   LT++    E + + + A++R      R  ++ +     R  +L   LL 
Sbjct: 586 TGGVAHDFNNLLTIIKSSTELLRKPNLADER-----RRRYIDAISDTVDRAAKLTGQLLA 640

Query: 412 VSRIEAGRMKARFEPVDLAAFTAELASSFRSAMDRAGLD-YRIDCPPLPEPVWIDRDL-- 468
            +R +  + +  FEP       AE+  S   +      D + +DC       WI+ D+  
Sbjct: 641 FARRQPLKPEV-FEPSARVGAVAEMLRSIVGSRIEIVADLHAVDC-------WIEADISQ 692

Query: 469 WEKIVLNLISNAFK-YTLSGGVAVAVQPV-------------GERAVLTVRDTGVGIPAE 514
           +E  ++N+  NA       G + + V  V             GE   +++ DTG GIP E
Sbjct: 693 FETALVNMAVNARDAMDGEGTLTITVDDVARIPQIRGHVGVPGEFVAISMEDTGAGIPPE 752

Query: 515 EQPRVFDRFHRIEGQSGRTHEGTGIGLALVKDLTQLHGGTVALDSDVGRGSTFTVTLPFG 574
              ++F+ F+  +       +GTG+GL+ V    +  GG + + S +G GS FT+ LP  
Sbjct: 753 RLMQIFEPFYTTKDVG----KGTGLGLSQVFGFAKQSGGDIDVQSALGSGSRFTLYLP-- 806

Query: 575 NAHVPATERPAGPIPASTATRADAFVAEALHWLPQEQGEQSAPALVDGASSGPAPERMRN 634
                     A P+    A                   E S  A + G          + 
Sbjct: 807 ---------RAKPVSLEVAPL-----------------ETSVSASIAGG---------KG 831

Query: 635 ATILLADDNADMRSYVERLLTAAGYRVETVGDGVAAVETAKAAPP-DLVLSDVMMPHLDG 693
             +L+ +DN D+ ++  +LL   GY      +G  A++        D V SDV+MP +  
Sbjct: 832 KRVLVVEDNIDVGTFSTQLLGDLGYETMWAANGQEALKLLTDDDSFDAVFSDVVMPGMG- 890

Query: 694 FGVIAALRGHPHTRDLPIILLSARAGEESSIEGLQAGADDYLVKPFSARELLARVEGALR 753
            GV   L        LP++L S   G    +        D L KP++  +L   +  A+R
Sbjct: 891 -GVELGLEIRKKYPGLPVVLTS---GYSHVLAEEGRHGFDLLQKPYAVEDLSRILRSAMR 946



 Score = 30.0 bits (66), Expect = 0.001
 Identities = 55/244 (22%), Positives = 93/244 (38%), Gaps = 36/244 (14%)

Query: 681 LVLSDVMMPHLDGFGVIAALRGHPHTRDLPIILLSARAGEESSIEGLQ----AGADDYLV 736
           +VL++  +   D   + A +   P   D+P ++L+   G E +    +     G   ++ 
Sbjct: 29  VVLTEEALTTADLHPLAAWIASQPEWSDMPFVVLTQGGGIERNPAARRYLDILGNASFIE 88

Query: 737 KPFSARELLARVEGALRLAELR---RETAEQLRQANEALERRVEERTRERDRFWRLSRDP 793
           +PF    L++ V+ ALR    +   R   E LR   E L   +E         W L    
Sbjct: 89  RPFHPTTLVSLVKAALRGRRRQYEARARLEALRAGEERLRFALEAGGMGA---WELDLRD 145

Query: 794 F--LVADREGRWLSASPAWTEILGWTEAEMLGRTSEWMEHPDDCDKTRREVRKLAGGGST 851
           F   V+D        +P       +T AE+    SE + HPDD     + +++       
Sbjct: 146 FTLAVSDLYRAGFGLAPG----ASFTYAEL----SE-LIHPDDRANRTKALQQAVAKRED 196

Query: 852 FRFENR-----------FRTRGGHYRDFAWTATPADELMFCVARDVTEEKERAATLRKTE 900
           +  E R              RG    D+A   TP    +  ++ D+T  K     L+K+E
Sbjct: 197 YETEYRVVLPDTGEIRWIAVRG--RPDYAADGTPL--RIAGISSDITRRKAVEEALQKSE 252

Query: 901 EQLR 904
            + R
Sbjct: 253 ARFR 256