Pairwise Alignments

Query, 1274 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 916 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

 Score =  382 bits (982), Expect = e-110
 Identities = 202/386 (52%), Positives = 262/386 (67%), Gaps = 6/386 (1%)

Query: 891  ERAATLRKTEEQLRQSQKMEAVGQLTGGMAHDFNNLLQAMSSCLQLVSRRVGHAPEVEPI 950
            E  A   + +  L Q+QK EA+GQ+TGG+AHDFNNLLQA+S CL ++ +R      ++P+
Sbjct: 522  EEVAERERVQIALLQTQKTEALGQMTGGVAHDFNNLLQALSGCLHMIEKRA-EGTRIQPL 580

Query: 951  LDAGRQAVDRGASLIRQLMAFSRRQSLQPEAFDVRDRLLGLRLFLDRALRADIGLEFALQ 1010
            +DAGRQAVDRGA L++QLMAF+RRQ+L+PE  D+RDR+LG+   L+RALRADI LE    
Sbjct: 581  VDAGRQAVDRGAKLVQQLMAFARRQALRPETVDLRDRVLGMSELLNRALRADIRLEVDFA 640

Query: 1011 GGLWPVMADPVQFDLAVLNLATNARDAIDADGAVVVGADNVVLDGMD-----GLSGEFLK 1065
             GLWPV  D  Q +LA+LNL  NARDA+   G + + A NV L   D     GLSGEF++
Sbjct: 641  TGLWPVEVDATQLELALLNLVVNARDAMPDGGMLSIQAANVTLTHGDPQAPNGLSGEFVR 700

Query: 1066 VFVRDSGRGIAPDALGRVFEPFFTTKAVGKGTGLGLAQVYGFCRQSGGTATVESVEGKGT 1125
            + V D+G G+  D   R F+PFFTTK +GKG+GLGL+QVYGF R SGGT  +ES EG+GT
Sbjct: 701  LTVSDTGTGMPADVQARAFDPFFTTKEIGKGSGLGLSQVYGFARHSGGTVWIESEEGRGT 760

Query: 1126 VVSLLLPRAEATVASETPNAPPVLPSAADIHVLLVEDDPVVAPVVTAALEDLGYRVTRAA 1185
            V+ LL+ R+    A+          S    HVL+VEDDP+VA  V  ALED G+ VTRAA
Sbjct: 761  VIGLLIRRSGTAPATAAKPVAEAGASRVGGHVLVVEDDPIVALTVATALEDAGFTVTRAA 820

Query: 1186 TGEEALRRLEEAAVDLLFSDVVMPGSINGVALAQEARQRWPDLGILLTTGYSEDLAATKS 1245
            T +EAL  LE    DLLFSDVVMPG+++GV LA+ A++  PDL ++L TGYSE++A    
Sbjct: 821  TADEALPLLEAGGFDLLFSDVVMPGTMSGVDLARSAQRLRPDLPVVLATGYSEEVARATG 880

Query: 1246 VRVLSKPYRIEDLAHAIQEELEDGAR 1271
            V VL KPYRI+ L   +   L +  R
Sbjct: 881  VMVLPKPYRIDHLVEVLDTLLTEAKR 906



 Score =  160 bits (404), Expect = 6e-43
 Identities = 85/180 (47%), Positives = 111/180 (61%), Gaps = 9/180 (5%)

Query: 12  GPGDMAALMRAKDWAATPFGPVETWSPALRSAIGICLGSRFPIVLYWGPTRALIYNDAWS 71
           G G+M   MR  DW+ATP GP E W  +LR+ + + L S FP+   WGP    +YND++ 
Sbjct: 39  GGGEMGRRMREMDWSATPLGPAEDWPQSLRTIVNLMLTSSFPMFAVWGPELTFLYNDSYR 98

Query: 72  PVPGNKHPWALGRPGREVWAEIWDIIGPMFDHVMTAGEATWSEDQLLPLNRFGYVEECYF 131
           P+ G+K P ALGRP   VWA+IW+ + P+    + AGEAT+ ED+LL + R  Y EE YF
Sbjct: 99  PILGDK-PEALGRPFAAVWADIWEDLVPLVARAL-AGEATYHEDRLLFMERHAYREETYF 156

Query: 132 YYSYSPVRGEDGRVEGIFTAVTETTQRVLAERR-------ERLLRGVSEATSRARSAAEA 184
            +SYSPVR E  RV G+F A TE T RVLAERR          LRG+++      +AAEA
Sbjct: 157 TFSYSPVRDEADRVAGMFCACTENTARVLAERRLTFQLDLAEKLRGLNDPVGITAAAAEA 216



 Score = 81.6 bits (200), Expect = 3e-19
 Identities = 131/515 (25%), Positives = 199/515 (38%), Gaps = 107/515 (20%)

Query: 282 VPI-LSARADAP--HGFLVTGISPRRRIDAPYVTLFERAAGHIATAITNAEAYEEE---- 334
           +PI    R D P    FL     P +  D     LF   +      +T A+  EEE    
Sbjct: 458 IPISFQRRPDGPLEERFLTFVYQPIKDEDGRVTGLFVEGSD-----VTEAKRAEEELQQL 512

Query: 335 -----RRRAEMLAELDRAKTAFFSN------------ASHEFRTPLTLMLGPVEDMLQRS 377
                 R AE +AE +R + A                 +H+F   L  + G +  + +R 
Sbjct: 513 NATLEARVAEEVAERERVQIALLQTQKTEALGQMTGGVAHDFNNLLQALSGCLHMIEKR- 571

Query: 378 PAEDRAAVPVERDALELVHRNGQRLLRLVNALLDVSRIEAGRMKARFEPVDLAAFTAELA 437
            AE     P+     + V R      +LV  L+  +R    R   R E VDL      ++
Sbjct: 572 -AEGTRIQPLVDAGRQAVDRGA----KLVQQLMAFAR----RQALRPETVDLRDRVLGMS 622

Query: 438 SSFRSAMDRAGLDYRIDCPPLPEPVWIDRDLWEKIVLNLISNAFKYTLSGGVAVAVQPV- 496
                A+ RA +   +D      PV +D    E  +LNL+ NA      GG+ +++Q   
Sbjct: 623 ELLNRAL-RADIRLEVDFATGLWPVEVDATQLELALLNLVVNARDAMPDGGM-LSIQAAN 680

Query: 497 ---------------GERAVLTVRDTGVGIPAEEQPRVFDRFHRIEGQSGRTHEGTGIGL 541
                          GE   LTV DTG G+PA+ Q R FD F   +       +G+G+GL
Sbjct: 681 VTLTHGDPQAPNGLSGEFVRLTVSDTGTGMPADVQARAFDPFFTTK----EIGKGSGLGL 736

Query: 542 ALVKDLTQLHGGTVALDSDVGRGSTFTVTLPFGNAHVPATERPAGPIPASTATRADAFVA 601
           + V    +  GGTV ++S+ GRG+   + +           R +G  PA+ A      VA
Sbjct: 737 SQVYGFARHSGGTVWIESEEGRGTVIGLLI-----------RRSGTAPATAAKP----VA 781

Query: 602 EALHWLPQEQGEQSAPALVDGASSGPAPERMRNATILLADDNADMRSYVERLLTAAGYRV 661
           EA                  GAS            +L+ +D+  +   V   L  AG+ V
Sbjct: 782 EA------------------GAS-------RVGGHVLVVEDDPIVALTVATALEDAGFTV 816

Query: 662 ETVGDGVAAVETAKAAPPDLVLSDVMMPHLDGFGVIAALRGHPHTRDLPIILLSARAGEE 721
                   A+   +A   DL+ SDV+MP     GV  A        DLP++L +  + E 
Sbjct: 817 TRAATADEALPLLEAGGFDLLFSDVVMPGTMS-GVDLARSAQRLRPDLPVVLATGYSEEV 875

Query: 722 SSIEGLQAGADDYLVKPFSARELLARVEGALRLAE 756
           +   G+       L KP+    L+  ++  L  A+
Sbjct: 876 ARATGVMV-----LPKPYRIDHLVEVLDTLLTEAK 905



 Score = 43.5 bits (101), Expect = 9e-08
 Identities = 36/136 (26%), Positives = 58/136 (42%), Gaps = 6/136 (4%)

Query: 67  NDAWSPVPGNKHPWALGRPGREVWAEI-WDIIGPMFDHVMTAGEATWSEDQLLPLNRF-- 123
           ND +  + G +    + RP R+   E+       + D V  +GE        +   R   
Sbjct: 410 NDTYMQLVGRRD--LMDRPARDALPEVEGQGFFELLDRVYASGETFVGHSIPISFQRRPD 467

Query: 124 GYVEECYFYYSYSPVRGEDGRVEGIFTAVTETTQRVLAERRERLLRGVSEATSRARSAAE 183
           G +EE +  + Y P++ EDGRV G+F   ++ T+   AE   + L    EA   A   AE
Sbjct: 468 GPLEERFLTFVYQPIKDEDGRVTGLFVEGSDVTEAKRAEEELQQLNATLEARV-AEEVAE 526

Query: 184 ACKAAVGCLVTLPEES 199
             +  +  L T   E+
Sbjct: 527 RERVQIALLQTQKTEA 542