Pairwise Alignments

Query, 1042 a.a., Efflux pump membrane transporter BepE from Azospirillum sp. SherDot2

Subject, 1009 a.a., Multidrug efflux pump subunit AcrB from Pseudomonas sp. RS175

 Score =  809 bits (2089), Expect = 0.0
 Identities = 444/1012 (43%), Positives = 642/1012 (63%), Gaps = 9/1012 (0%)

Query: 1    MVLSDISIRRPVLATVMSLALMLIGIVSYQRLSVREYPKIDEPVVTVETTYKGASAQIIE 60
            M  +D  IRRPVLATV+SL ++L+G  ++ +L +R+YP+++  ++TV T Y GA+A+ I+
Sbjct: 1    MAFTDPFIRRPVLATVVSLLIVLLGFQAWSKLPLRQYPQMENALITVTTAYPGANAETIQ 60

Query: 61   SQVTQTLEDSLAGIEGIDVMSSISRAEKSQITLRFRLDRNVDVAASDVRDRVGRVRAQLP 120
              +TQ ++ SLA  EGID M+S+SR   S I++  R+  N D   +++  +   V+ +LP
Sbjct: 61   GYITQPMQQSLASAEGIDYMTSVSRQNFSVISVYARIGTNNDRLFTELLAKANEVKNELP 120

Query: 121  SEIDEPVIAKVEADAQPIIYLAFSSDRHSPLEVTDFADRYVKDRLQNLPGVAQVRIFGER 180
             + ++PV+++  ADA  ++Y++F S   S  ++TD+  R V+ +L  LPG+A+  I G +
Sbjct: 121  QDAEDPVLSREAADASALMYISFYSQELSNPQITDYLSRVVQPKLATLPGMAEAEILGNQ 180

Query: 181  RFAMRLWLDPQRMAAYRVTPQDVENALRRQNVEIPAGRVESVAREFTVVSETDLRSPAEF 240
             FAMRLWLDP ++A + +T  DV  A+R+ N    AG V+      ++ + T+L++   F
Sbjct: 181  VFAMRLWLDPVKLAGFGLTAADVTAAVRQYNFLSAAGEVKGEYVVTSINANTELKTAEAF 240

Query: 241  EAIILRDDSGYLVRLRDVGRAELGALDERVSARFNGRGAVAIGVVKQSTANPLDVSKAVN 300
             AI L+ +    V LRDV R E+GA +    + F G  +V IG+     ANPLDV K V 
Sbjct: 241  AAIPLKTEGDSRVLLRDVARVEMGAENYDTISSFGGTPSVYIGIKATPGANPLDVIKEVR 300

Query: 301  DALPKIRAAVPDGMGVDVGYDSSVFIAKSIDAVFHTIFEAIILVVLVIFFFLRSLRATLV 360
              +P++ A +P  +  ++ YD+++FI  SID V  T+FEA+++V++V+F FL +LR+ ++
Sbjct: 301  RVMPELEAQLPSNLKAEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLFLGALRSVVI 360

Query: 361  PLVTIPVSLIGGFALMYALGFSINTLTLLSMVLAIGLVVDDAIVMLENIFRYVEEGMNPF 420
            P+VTIP+S+IG    M  +G+S+N LTLL+MVLAIGLVVDDAIV++ENI R++EEG +PF
Sbjct: 361  PVVTIPLSMIGVMFFMQLMGYSMNLLTLLAMVLAIGLVVDDAIVVVENIHRHIEEGKSPF 420

Query: 421  QAALKGSREIGFAVIAMTITLAAVYAPIGFMTGRTGRLFTEFALTLAGAVIVSGFVALTL 480
             AAL+G+REI   V++MTITLAAVYAPIG + G TG LF EFALTLAGAV++SG VALTL
Sbjct: 421  DAALEGAREIAMPVVSMTITLAAVYAPIGLLEGLTGALFKEFALTLAGAVVISGIVALTL 480

Query: 481  SPMMCSKLLKHETKHGLLYRAIERFLEGMTNGYRRLLRLSLRARPLVLLIGLGVAAASYF 540
            SPMMC+ LL+ +     L   ++   E + + Y+R+L  +L  RP VL+  + V      
Sbjct: 481  SPMMCAMLLRRDENPSGLAHRLDGMFERLKSRYQRMLHGTLNTRPAVLVFAVIVLLLIPV 540

Query: 541  LFTGLKSELSPVEDRGTIVGIAIAPEGSTLDYTMGYAQRMEALFRQIPVLEKFFVVVGFP 600
            L    KSEL+P ED+G I  +A AP+ + LDY   Y      +F++ P     F + G+ 
Sbjct: 541  LVMFTKSELAPDEDQGIIFMMASAPQHTNLDYLNAYTDHFLTIFKEFPEYYSSFQINGYN 600

Query: 601  VVNQGIAFVRLIDWDEREVKQQAITAQLFPKMFGIPGILGFVTNPPSLGQSPIDKPVNFV 660
             V  GI    L  W+ER+  Q  I  ++  ++  IPG+  F  N PSL  +    P  FV
Sbjct: 601  GVQSGIGGFLLKPWNERDRTQMEILPEVQERLETIPGLQIFGFNLPSLPGTGEGLPFAFV 660

Query: 661  IQTSLPFEELQAMVNAMMAEARNFPGLTNLDTDLKLNKPELRVSLDRDKAADLGVDVDTV 720
            I     +  L  +   +   A        +D DL  +KPE+ V +DR KAA +GV +  +
Sbjct: 661  INAPKDYATLLEIAERVKKRALESGKFAFMDIDLAFDKPEVVVDIDRAKAAQMGVSMQDL 720

Query: 721  GRTLETLLGGRQVTRFKKDGKQYDVIVQVANVDRRNPDDIAGIYVRGGTSATGGAGQMIS 780
            G TL TLLG  ++ RF  +G+ Y VI QV    R NPD +   YV+         G+ + 
Sbjct: 721  GGTLATLLGESEINRFTIEGRSYKVIAQVERPYRDNPDWLNNYYVK------NAQGESLP 774

Query: 781  LANLVKVEERVAPKELNHFNKLRSATITATLAPGTSLGEALAVMQAAANKVLPATAQTDY 840
            L+ L+KV +R  P++LN F +L + TI+    P  S+GEA+  ++  A +  P     DY
Sbjct: 775  LSTLIKVSDRARPRQLNQFQQLNAVTISG--FPIVSMGEAIETVRQIAQEEAPTGFAFDY 832

Query: 841  AGQSREFRESATGLYFVFILALAFIYLVLAAQFESFVDPFVIMLTVPLSMTGALAALQMS 900
            AG SR+F +  + L+  F LALA I+LVLAAQFESF DP VI++TVPLS+ GAL  L + 
Sbjct: 833  AGASRQFVQEGSALWVTFALALAIIFLVLAAQFESFRDPLVILVTVPLSICGALIPLFLG 892

Query: 901  GGTMNVYSQIGLVTLVGLITKHGILIVEFANQLQR-AGTDIRKAVEEAAVLRLRPILMTT 959
              +MN+Y+Q+GLVTL+GLI+KHGILIVEFANQL++  G   R+AVE+AA +RLRP+LMTT
Sbjct: 893  WSSMNIYTQVGLVTLIGLISKHGILIVEFANQLRKEQGLAPREAVEQAASIRLRPVLMTT 952

Query: 960  GAMVLGAVPLAYAKGAGAESRQAIGAVIVGGMTLGTLLTLFVVPTVYSYLAR 1011
             AMV G VPL  A GAGA SR  IG VI  GM++GTL TLFV+P +Y+ LA+
Sbjct: 953  AAMVFGMVPLILATGAGAVSRFDIGMVIATGMSIGTLFTLFVLPCIYTLLAK 1004



 Score = 54.7 bits (130), Expect = 3e-11
 Identities = 68/324 (20%), Positives = 137/324 (42%), Gaps = 28/324 (8%)

Query: 701  LRVSLDRDKAADLGV---DVDTVGRTLETLLGGRQVTRFKKDGKQYDVIVQVANVDRRNP 757
            +R+ LD  K A  G+   DV    R    L    +V        +Y V    AN + +  
Sbjct: 184  MRLWLDPVKLAGFGLTAADVTAAVRQYNFLSAAGEVKG------EYVVTSINANTELKTA 237

Query: 758  DDIAGIYVRGGTSATGGAGQMISLANLVKVEERVAPKE-LNHFNKLRSATITATLAPGTS 816
            +  A I ++     T G  +++ L ++ +VE      + ++ F    S  I     PG +
Sbjct: 238  EAFAAIPLK-----TEGDSRVL-LRDVARVEMGAENYDTISSFGGTPSVYIGIKATPGAN 291

Query: 817  LGEALAVMQAAANKV---LPATAQTDYAGQSREFRESATG-----LYFVFILALAFIYLV 868
              + +  ++    ++   LP+  + + A  +  F +++       L+   ++ +  ++L 
Sbjct: 292  PLDVIKEVRRVMPELEAQLPSNLKAEIAYDATLFIQASIDEVVKTLFEAVLIVIVVVFLF 351

Query: 869  LAAQFESFVDPFVIMLTVPLSMTGALAALQMSGGTMNVYSQIGLVTLVGLITKHGILIVE 928
            L A   S V P V   T+PLSM G +  +Q+ G +MN+ + + +V  +GL+    I++VE
Sbjct: 352  LGA-LRSVVIPVV---TIPLSMIGVMFFMQLMGYSMNLLTLLAMVLAIGLVVDDAIVVVE 407

Query: 929  FANQLQRAGTDIRKAVEEAAVLRLRPILMTTGAMVLGAVPLAYAKGAGAESRQAIGAVIV 988
              ++    G     A  E A     P++  T  +     P+   +G      +     + 
Sbjct: 408  NIHRHIEEGKSPFDAALEGAREIAMPVVSMTITLAAVYAPIGLLEGLTGALFKEFALTLA 467

Query: 989  GGMTLGTLLTLFVVPTVYSYLARK 1012
            G + +  ++ L + P + + L R+
Sbjct: 468  GAVVISGIVALTLSPMMCAMLLRR 491