Pairwise Alignments

Query, 784 a.a., Protein YhgF from Azospirillum sp. SherDot2

Subject, 774 a.a., Transcription accessory protein (S1 RNA-binding domain) from Pseudomonas fluorescens GW456-L13

 Score = 1006 bits (2601), Expect = 0.0
 Identities = 518/785 (65%), Positives = 619/785 (78%), Gaps = 12/785 (1%)

Query: 1   MLSISQRIADELSVRESQVASAIAMLDEGSTVPFIARYRKEATGGLDDTQLRTLEERLGY 60
           M SI+ RIA+EL VR  QV +A+A+LDEGSTVPFIARYRKE TG LDDTQLR LEERL Y
Sbjct: 1   MDSINSRIAEELGVRPQQVEAAVALLDEGSTVPFIARYRKEVTGSLDDTQLRHLEERLRY 60

Query: 61  LRELEDRRASILSTIQDQGKLTPELERQIKQADTKTRLEDLYLPYKQKRRTKAQIAREAG 120
           LREL++RR SIL++IQ+QGKLTP+LER IK ADTKTRLEDLYLPYKQKRRTK QIA EAG
Sbjct: 61  LRELDERRISILASIQEQGKLTPQLERDIKLADTKTRLEDLYLPYKQKRRTKGQIALEAG 120

Query: 121 LEPLADALLADPKKQPDMEAAAFVSADKGVADVKAALDGARHILVERFGEDAELVGRLRT 180
           L  LAD L  DP   P+ EAA F+ A+KGVADVKAAL+GA++IL+ERF EDA L+ +LR+
Sbjct: 121 LGELADGLFNDPSLSPETEAARFIDAEKGVADVKAALEGAKYILMERFAEDAGLLDKLRS 180

Query: 181 AMADKGVVTSKVIEEKKAEGAKFSDYFDFSENWSKLPSHRALALFRGRAQGVLDIRLDLP 240
            +  +  ++++VI  K+ EGAKF DYF+  E    +PSHRALA+FRGR +G+L   L + 
Sbjct: 181 YLKQEATLSARVIAGKEEEGAKFRDYFEHDEPLKSMPSHRALAIFRGRNEGILSSALKVG 240

Query: 241 VE-EGQPHPAEGTIAVHTGIRDQGRPADKWLSDVVRWTWKLKIGPHIETDLMGSLRERAE 299
            E  G  HP EG I    GI++Q R ADKWL +VVRWTWK+K+  H+ETDL+G LR+ AE
Sbjct: 241 DELPGTMHPCEGMIGQQFGIQNQNRAADKWLGEVVRWTWKVKLYTHLETDLLGELRDGAE 300

Query: 300 DEAIRVFARNLHDLLLAAPAGQRVTIGLDPGIRTGVKVAVVDATGKLVETTTIYPHPPRN 359
            EAI VFA NLHDLLL+APAG R T+GLDPG+RTG KVAVVD+TGKL++  T+YPH P N
Sbjct: 301 TEAINVFAHNLHDLLLSAPAGPRATLGLDPGLRTGCKVAVVDSTGKLLDHATVYPHVPHN 360

Query: 360 DWDGSLAVLAALAARHKAELISIGNGTASRETDKLAADLMKRHPELSLTKLVVSEAGASV 419
            WD +LAVLAAL A+H  +LI+IGNGTASRETDKLAA+L+K++P + +TK++VSEAGASV
Sbjct: 361 KWDQTLAVLAALCAKHSVDLIAIGNGTASRETDKLAAELIKKYPAMKMTKVMVSEAGASV 420

Query: 420 YSASETAAHEFPTLDVSLRGAVSIARRLQDPLAELVKIEPKSIGVGQYQHDVAGGKLARS 479
           YSASE A+ EFP LDVS+RGAVSIARRLQDPLAELVKI+PKSIGVGQYQHDV+  KLAR 
Sbjct: 421 YSASELASKEFPDLDVSIRGAVSIARRLQDPLAELVKIDPKSIGVGQYQHDVSQLKLARG 480

Query: 480 LDAVVEDCVNAVGVDLNTASIPLLTRVSGLNETIARNIVEHRDRNGAFRSRKQLLDVARL 539
           LDAVVEDCVNAVGVD+NTAS+ LL R+SGLN T+A+NIV HRD +GAF++R  L  VARL
Sbjct: 481 LDAVVEDCVNAVGVDVNTASVALLARISGLNATLAQNIVSHRDEHGAFKTRAALKKVARL 540

Query: 540 GPKTFEQAAGFLRIRDSENPLDGSAVHPEAYPVVQRIVKTTGRDLGSVIGDARFLRGLNA 599
           G KTFEQAAGFLR+ + ENPLD SAVHPEAYP+VQRI   T RD+ S+IGDA FL+ L+ 
Sbjct: 541 GEKTFEQAAGFLRVMNGENPLDSSAVHPEAYPLVQRIAAETDRDIRSLIGDATFLKRLDP 600

Query: 600 EEFTDERFGVPTVEDIIKELEKPGRDPRPEFKTATFKEGVEELKHLQPGMMLEGVVTNVT 659
           +++TDE FG+PTV DI++ELEKPGRDPRPEFKTA F+EGVE+LK LQ GM+LEGVVTNVT
Sbjct: 601 KKYTDETFGLPTVTDILQELEKPGRDPRPEFKTAEFQEGVEDLKDLQLGMILEGVVTNVT 660

Query: 660 AFGAFVDIGVHQDGLVHISQLANSFVKDPHTVVKAGDVVKVKVLEVDIPRKRIALTMRMG 719
            FGAFVDIGVHQDGLVHIS L+  F+KDP   VKAGDVVKVKV+EVDIPRKR+ L+MRM 
Sbjct: 661 NFGAFVDIGVHQDGLVHISALSEKFIKDPREAVKAGDVVKVKVMEVDIPRKRVGLSMRMS 720

Query: 720 EEAPRPARREEQRRDERGPGRPPQQQDRRPAAPAAKAAPKPAKAPEPVNSAFAEAFARAQ 779
           +    P  + +  R  R    P Q Q+  P      AAP         N+A A  FA A+
Sbjct: 721 D---TPGEKIDGARGARPGSAPRQSQNTAPRKETTAAAPS--------NNAMASLFANAK 769

Query: 780 SGKKK 784
             KK+
Sbjct: 770 QLKKR 774