Pairwise Alignments

Query, 784 a.a., Protein YhgF from Azospirillum sp. SherDot2

Subject, 822 a.a., Transcription accessory protein (S1 RNA-binding domain) from Hydrogenophaga sp. GW460-11-11-14-LB1

 Score =  843 bits (2179), Expect = 0.0
 Identities = 462/801 (57%), Positives = 568/801 (70%), Gaps = 41/801 (5%)

Query: 1   MLSISQRIADELSVRESQVASAIAMLDEGSTVPFIARYRKEATGGLDDTQLRTLEERLGY 60
           M  I ++IA E+ V E QV +A+ +LD G+TVPFIARYRKE TGGLDD QLR L  RL Y
Sbjct: 34  MQQIIRQIATEIRVEERQVQAAVELLDGGATVPFIARYRKEVTGGLDDIQLRELSYRLDY 93

Query: 61  LRELEDRRASILSTIQDQGKLTPELERQIKQADTKTRLEDLYLPYKQKRRTKAQIAREAG 120
           LRELEDRRA++L +I +QGKLT  L   I    TK  LEDLYLP+KQKRRTK QIARE G
Sbjct: 94  LRELEDRRAAVLKSIDEQGKLTDALRAAIAAVPTKQELEDLYLPFKQKRRTKGQIAREFG 153

Query: 121 LEPLADALLADPKKQPDMEAAAFVSADKGVAD---------VKAALDGARHILVERFGED 171
           +EPLAD L ADP   P  EAAAF    + + D         V A LDG R IL ER+ ED
Sbjct: 154 IEPLADKLFADPTLDPSTEAAAFTRPPEVLDDGKPGADFSTVPAVLDGVRDILSERWAED 213

Query: 172 AELVGRLRTAMADKGVVTSKVI---EEKKAEGAKFSDYFDFSENWSKLPSHRALALFRGR 228
             LV  LR  +  +G++ S ++   +E   E AKF DYF++ E  +++PSHRALA+FRGR
Sbjct: 214 PSLVQNLREWLWSEGLLKSTLVNGKDENAPEVAKFRDYFEYDEPIARVPSHRALAVFRGR 273

Query: 229 AQGVLDIRLDLP-----VEEGQPHP----AEGTIAVHTGIRDQGRPADKWLSDVVRWTWK 279
              +LD +L LP     V  G+P      AEG IA+H G   + R AD  L   + WTW+
Sbjct: 274 GLEILDAKLVLPEPPDAVPAGKPGATPSLAEGRIALHLGWSHKARAADDLLRKCMAWTWR 333

Query: 280 LKIGPHIETDLMGSLRERAEDEAIRVFARNLHDLLLAAPAGQRVTIGLDPGIRTGVKVAV 339
           +K+    E DL   LRE AE  AI+VFA NL DLLLAAPAG +V +GLDPGIRTGVKVAV
Sbjct: 334 VKLSLSSERDLFARLRESAEAVAIKVFADNLRDLLLAAPAGPKVVMGLDPGIRTGVKVAV 393

Query: 340 VDATGKLVETTTIYPHPPRNDWDGSLAVLAALAARHKAELISIGNGTASRETDKLAADLM 399
           VDATGKLV+T T+YPH PR DWDG+L  LA L  +H   LI+IGNGTASRETDKLAADL+
Sbjct: 394 VDATGKLVDTATVYPHEPRRDWDGALHTLALLGRKHGVNLIAIGNGTASRETDKLAADLI 453

Query: 400 KRHPELSLT---KLVVSEAGASVYSASETAAHEFPTLDVSLRGAVSIARRLQDPLAELVK 456
           K   + +LT   K+VVSEAGASVYSASE A+ E P +DVSLRGA SIARRLQDPLAELVK
Sbjct: 454 KLLEKANLTGVQKVVVSEAGASVYSASEFASQEMPDVDVSLRGAASIARRLQDPLAELVK 513

Query: 457 IEPKSIGVGQYQHDVAGGKLARSLDAVVEDCVNAVGVDLNTASIPLLTRVSGLNETIARN 516
           I+PKSIGVGQYQHDV   +LAR+L+AVVEDCVN VGVDLNTAS+PLL+RVSGL+ ++A+ 
Sbjct: 514 IDPKSIGVGQYQHDVNQSELARTLEAVVEDCVNGVGVDLNTASVPLLSRVSGLSGSVAKA 573

Query: 517 IVEHRDRNGAFRSRKQLLDVARLGPKTFEQAAGFLRIRDSENPLDGSAVHPEAYPVVQRI 576
           +V  R+ NGAF+SR+QL+DVA LG KTFEQ+AGFLRIR  +NPLD + VHPE Y VV++I
Sbjct: 574 VVRWRETNGAFKSRQQLMDVAGLGAKTFEQSAGFLRIRGGDNPLDMTGVHPETYAVVEQI 633

Query: 577 VKTTGRDLGSVIGDARFLRGLNAEEFTDERFGVPTVEDIIKELEKPGRDPRPEFKTATFK 636
           ++ TG+ +  ++G A  L+ L  E F +ERFGV TV+DI+ ELEKPGRDPRP+F+ A F 
Sbjct: 634 MEKTGKPVAELMGRADMLKTLRPELFANERFGVITVKDILGELEKPGRDPRPDFQVARFN 693

Query: 637 EGVEELKHLQPGMMLEGVVTNVTAFGAFVDIGVHQDGLVHISQLANSFVKDPHTVVKAGD 696
           EGV+++  L+ GM+LEG V+NV  FGAFVD+GVHQDGLVH+SQL++ FV D   +VK GD
Sbjct: 694 EGVDDISDLREGMVLEGTVSNVAQFGAFVDLGVHQDGLVHVSQLSHKFVNDAREIVKTGD 753

Query: 697 VVKVKVLEVDIPRKRIALTMRMGEEAPRPARREEQRRDERGPGRPPQQQDRRPAAPAAKA 756
           +VKVKV+EVD+ RKRI L+M++      PARR+  R +   P R       R + PA+  
Sbjct: 754 IVKVKVMEVDVARKRIGLSMKLD---AAPARRDGPRDNRYEPSR----GQGRASGPASPP 806

Query: 757 APKPAKAPEPVNSAFAEAFAR 777
           AP          SA A AFA+
Sbjct: 807 AP----------SAMASAFAK 817