Pairwise Alignments

Query, 300 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 713 a.a., Lipopolysaccharide assembly protein B from Azospirillum sp. SherDot2

 Score =  100 bits (249), Expect = 1e-25
 Identities = 92/303 (30%), Positives = 127/303 (41%), Gaps = 30/303 (9%)

Query: 8   LTLALDLHLAGRFGEAQELYTRILDVEPEQPDALHYLGVLAGQIDRGEFGLTLIGKALAL 67
           +  A+  H AGR GEA  LY  +LD  P   DA H LGV+  Q  + +  ++LI  A+  
Sbjct: 1   MAAAVAHHQAGRLGEAAALYHAVLDALPGHADAAHLLGVVHLQSGQPDRAVSLIRGAIQH 60

Query: 68  RPEAADIHANRANLLRGLDRPNEAEDSYRRALALRPDFAEAWTDRAFARHDHGDPAAIDA 127
               AD H N  + L+ L R  EA  ++R+A+ LRP+FA+A  +   A    G    ++ 
Sbjct: 61  NHRVADYHDNLGSALKALGRLEEAVAAHRQAVRLRPEFAQALYNLGNALEAQG---RLEE 117

Query: 128 TATMLERALGIEPALEPARERLVDLLHA---------------------------RGRLR 160
            AT   +A    P    AR  L ++L A                           RG L 
Sbjct: 118 AATAFRQAAARRPGYARARFNLGNVLAALDRRADADDAYRAALADDPTFVEAHANRGALL 177

Query: 161 LESGQVTPALADLIRAAALDQQDADISFLLGNALFAAGLRADSVIAFRNALALVPDFLSA 220
           L   +   A ADL RA AL    A     L  A  A G R  + +A R+A+A  PD    
Sbjct: 178 LALERPREAAADLSRALALRPDHAPALSNLAAARLALGDRDGAELAARHAVAARPDLADC 237

Query: 221 ALNLGIALAATNHAAAALAPLRHAVRIDPAHPAPRDTLALALRSLGHAEEADVLVRPAPP 280
            L LG      +   AA    R A+  +PA    +  LAL  +  G  + A+   R A  
Sbjct: 238 LLRLGEVRQRADRLGAAADAYRTALAWNPALAEAQANLALVRQGQGLLDAAEAGNRRALA 297

Query: 281 QQP 283
             P
Sbjct: 298 LDP 300



 Score = 37.4 bits (85), Expect = 1e-06
 Identities = 27/80 (33%), Positives = 38/80 (47%)

Query: 35  PEQPDALHYLGVLAGQIDRGEFGLTLIGKALALRPEAADIHANRANLLRGLDRPNEAEDS 94
           P+  D L  LG +  + DR          ALA  P  A+  AN A + +G    + AE  
Sbjct: 232 PDLADCLLRLGEVRQRADRLGAAADAYRTALAWNPALAEAQANLALVRQGQGLLDAAEAG 291

Query: 95  YRRALALRPDFAEAWTDRAF 114
            RRALAL P  A+  ++ A+
Sbjct: 292 NRRALALDPTLADVRSNLAY 311