Pairwise Alignments

Query, 1137 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1149 a.a., transcription-repair coupling factor from Pseudomonas fluorescens SBW25

 Score =  549 bits (1415), Expect = e-160
 Identities = 389/1085 (35%), Positives = 555/1085 (51%), Gaps = 65/1085 (5%)

Query: 29   GSEGELAVRLAALARRPGGALLLARSDARATRLARLVGDLFPDLDTILLPIDETAAGDRA 88
            G+   LA+  AA A +    LL A S + A RL + +    PDL  +  P  ET   D  
Sbjct: 23   GAALSLAIAEAASAAKRFTLLLTADSQS-AERLEQELSFFAPDLPVLHFPDWETLPYDLF 81

Query: 89   APSRAVLGRRAAGLMRLAERGEPASGRLVVASADLALQRVPPPQAWAGGHFRLTRGMAYD 148
            +P + ++ +R A L RL E    A G LVV     AL R+ P +   G    L  G   D
Sbjct: 82   SPHQDIISQRIASLYRLPEL---AHGVLVVPITT-ALHRLAPTKFLLGSSLVLDIGQKLD 137

Query: 149  EAAWRGWFARTGYVMDDRVDEPGEVAIRGAVVEVFPGHCDRPVRCDIADGVVRDLRLYDP 208
                R     +GY   D V E GE A+RGA++++FP     P R D+ D  +  LR +DP
Sbjct: 138  VEQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGSKLPYRIDLFDDEIETLRTFDP 197

Query: 209  VSQRSVESIDELALGPVTDLIVGPEMLDRLAASLARLGSALPEGLRR-----ELEEGRRP 263
             +QRS++ +D + L P  +    P   D +    AR         RR     +L  G  P
Sbjct: 198  ENQRSIDKVDSIKLLPAREF---PLQKDAVTRFKARFRERFDVDFRRCPIFQDLSSGITP 254

Query: 264  YAFDLQLPNVFDDCPLLLDLLPEALVVLDA-GARDRIEARADDLAEAGIDRRIRRDDPCL 322
               +  LP  FD+   L D LP+   V    G     E   +D+     +RR+    P L
Sbjct: 255  AGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFWNDVRNRYEERRVDPSRPLL 314

Query: 323  ------LPVPPLERRL------------IDADALDEKLAARTLLPVEVTNGPVVEAVRTE 364
                  LPV     RL            +DA +  E+  A TL  +       ++A  T+
Sbjct: 315  PPAELFLPVEDCFARLKNWPRVVASQQDVDAGSGRERFPAGTLPDL------AIQAKATQ 368

Query: 365  RTLLRRSVGLVGEGRAVLLAARSGAGEADRLAERMSSALGRPVPRLDRWPEPPLAAGDCA 424
               L      +G+    +L     AG  + L E +     RP   +D WP+   +    A
Sbjct: 369  P--LEALSNFLGDFPGRVLFTAESAGRREVLLELLERLKLRP-KTVDSWPDFVKSKERLA 425

Query: 425  V-LALRSAGGFTCDGMTVLVAP-----------RHAEERGGEAQVRPPLAPSELSTGDFV 472
            + +A    G    D    L+A            R  E+R            +EL  G  V
Sbjct: 426  ITIAPLDEGLLLDDPALALIAESPLFGQRVMQRRRREKRADANNDAVIKNLTELREGAPV 485

Query: 473  VHLDYGIGRLIGLETIASGDGEDDTADFLVLDYAHDDRLLVPTADFDRLWRH-GSADTGA 531
            VH+D+G+GR +GL+T+   + ++  A+FL ++YA   +L VP A    + R+ GS D  A
Sbjct: 486  VHIDHGVGRYLGLQTL---EIDNQAAEFLTMEYAEGAKLYVPVASLHLIARYTGSDDALA 542

Query: 532  KLDSLKNAHWLERRAVLEAEIGETAKGILR-EARRRARESAPVIDPPVDRMRRFGARFGF 590
             L  L +  W + +     ++ + A  +L   ARR ARE     DP  D    F A F F
Sbjct: 543  PLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAREGYAFADPKAD-YATFSAGFAF 601

Query: 591  DPTEGQRRAIQTVLDAMRQGQPMDHLVCADVGYGKTEVALRAAAAVAFAGHQVAVMAPTS 650
            + T  Q+  I+ V   M   +PMD LVC DVG+GKTEVA+RAA      G QVA++ PT+
Sbjct: 602  EETPDQQTTIEAVRADMLAPKPMDRLVCGDVGFGKTEVAMRAAFIAVHGGKQVAILVPTT 661

Query: 651  VLARQHLEVFRRRFAGFGIRLEPLTGAMTKTESDRVRAGLADGSVDIVIGTHALLSKDVR 710
            +LA+QH   FR RFA + + +E ++   +  E +   A LA+G +DIVIGTH LLS DV+
Sbjct: 662  LLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVNAAIADLAEGKIDIVIGTHKLLSDDVK 721

Query: 711  FQRLGLMVVDEEQRFGATQKQALKRRIKGVHSLALSATPIPRTLQGALAGLRGLSIIDTP 770
             + LGL+++DEE RFG  QK+ LK     V  L L+ATPIPRTL  A++G+R LSII TP
Sbjct: 722  IKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATPIPRTLNMAVSGMRDLSIIATP 781

Query: 771  PARRRPVRTAVTPRDPTTARAALLRELGRGGQVFCVTPRIADLGELEEWIRGLVPSACIA 830
            PARR  VRT V  ++ +T + ALLREL RGGQV+ +   +  + +    +  LVP A IA
Sbjct: 782  PARRLSVRTFVMEQNKSTVKEALLRELLRGGQVYYLHNDVKTIEKCAADLAELVPEARIA 841

Query: 831  VAHGRLGAAALDDAVMGFVDGESDILLATPIIESGIDIPRANTLLLFRPDLFGLGQLHQL 890
            + HG++    L+  +  F     ++L+A+ IIE+GID+P ANT+++ R D FGL QLHQL
Sbjct: 842  IGHGQMRERDLEQVMSDFYHKRFNVLIASTIIETGIDVPSANTIIIERADKFGLAQLHQL 901

Query: 891  RGRVGRGAVQGYAYLLTDPDHPLEERAARRLGSLEVIESLGGGFVLSMLDLDQRGAGDLL 950
            RGRVGR   Q YAYLLT P   +   A +RL ++   + LG GFVL+  DL+ RGAG+LL
Sbjct: 902  RGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEAIANTQDLGAGFVLATNDLEIRGAGELL 961

Query: 951  GEDQSGHLRAVGTELYQRILADALRALRRQPDARWD------PEVTVAVPHGIPSAYIPE 1004
            G+ QSG ++AVG  LY  +L  A++A+R+      D      PE+ + +P  IP  Y+P+
Sbjct: 962  GDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQPNLDQPLGGGPEINLRLPALIPEDYLPD 1021

Query: 1005 EELRIGLHRRIARTREAGELDALREEMEDRFGPLPVPMERLLAIAGLRCRCRALGIASLG 1064
               R+ L++RIA   +   L  L+ EM DRFG LP P + L+ +  L+ +   LGI  + 
Sbjct: 1022 VHARLILYKRIASATDEEGLKDLQVEMIDRFGLLPEPTKNLVRLTLLKLQAEQLGIKKVD 1081

Query: 1065 CGPAG 1069
             GP G
Sbjct: 1082 AGPQG 1086