Pairwise Alignments

Query, 1137 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1164 a.a., transcription-repair coupling factor from Escherichia coli ECRC100

 Score =  481 bits (1238), Expect = e-139
 Identities = 356/1086 (32%), Positives = 544/1086 (50%), Gaps = 56/1086 (5%)

Query: 17   PVPASSPTSLSVGSEGELAVRLAALARRPGGALLLARSDAR-ATRLARLVGDLFPDLDTI 75
            PV A     L   +    A  +A +A R  G ++L   D + A RL   +   F D   +
Sbjct: 26   PVKAGEQRLLGELTGAACATLVAEIAERHAGPVVLIAPDMQNALRLHDEISQ-FTDQMVM 84

Query: 76   LLPIDETAAGDRAAPSRAVLGRRAAGLMRLA--ERGEPASGRLVVASADLALQRVPPPQA 133
             L   ET   D  +P + ++  R + L +L   +RG      +++   +  +QRV P   
Sbjct: 85   NLADWETLPYDSFSPHQDIISSRLSTLYQLPTMQRG------VLIVPVNTLMQRVCPHSF 138

Query: 134  WAGGHFRLTRGMAYDEAAWRGWFARTGYVMDDRVDEPGEVAIRGAVVEVFPGHCDRPVRC 193
              G    + +G      A R      GY   D+V E GE A RGA++++FP   + P R 
Sbjct: 139  LHGHALVMEKGQRLSRDALRTQLDSAGYRHVDQVMEHGEYATRGALLDLFPMGSELPYRL 198

Query: 194  DIADGVVRDLRLYDPVSQRSVESIDELALGPVTDLIVGPEMLDRLAASLARLGSAL--PE 251
            D  D  +  LR++D  SQR++E ++ + L P  +       ++   +           PE
Sbjct: 199  DFFDDEIDSLRVFDVDSQRTLEEVEAINLLPAHEFPTDKAAIELFRSQWRDTFEVKRDPE 258

Query: 252  GLRRELEEGRRPYAFDLQLPNVFDD-CPLLLDLLPEALVVLDAGARDRIEAR--ADDLAE 308
             + +++ +G  P   +   P  F +  P L    P   ++++ G  +    R  AD LA 
Sbjct: 259  HIYQQVSKGTLPAGIEYWQPLFFSEPLPPLFSYFPANTLLVNTGDLENSAERFQADTLAR 318

Query: 309  AGIDRRIRRDDPCLLPVPPLERRLIDADALDEKLAARTLLPVEVTNGPVVEAVRTERTLL 368
                   R  DP + P+ P +   +  D L  +L     + ++  + P   A        
Sbjct: 319  F----ENRGVDP-MRPLLPPQSLWLRVDELFSELKNWPRVQLKTEHLPTKAANANLGFQK 373

Query: 369  RRSVGLVGEGRAVLLAARSGAGEADRL------AERMSSALGRPVPRLDRWPEPPLAAGD 422
               + +  + +A L A R      D        +E    ALG  + R+   P+  +   +
Sbjct: 374  LPDLAVQAQQKAPLDALRKFLESFDGPVVFSVESEGRREALGELLARIKIAPQRIMRLDE 433

Query: 423  CA-----VLALRSAGGFT---------CDGMTVLVAPRHAEERGGEAQVRPPLAP----S 464
             +     ++   +  GF          C+  + L+  R A  R    +   P       +
Sbjct: 434  ASDRGRYLMIGAAEHGFVDTVRNLALICE--SDLLGERVARRRQDSRRTINPDTLIRNLA 491

Query: 465  ELSTGDFVVHLDYGIGRLIGLETIASGDGEDDTADFLVLDYAHDDRLLVPTADFDRLWRH 524
            EL  G  VVHL++G+GR  G+ T+ +G     T ++L+L YA+D +L VP +    + R+
Sbjct: 492  ELHIGQPVVHLEHGVGRYAGMTTLEAGG---ITGEYLMLTYANDAKLYVPVSSLHLISRY 548

Query: 525  -GSADTGAKLDSLKNAHWLERRAVLEAEIGETAKGILREARRRARESAPVIDPPVDRMRR 583
             G A+  A L  L    W   R     ++ + A  +L    +RA +         ++ + 
Sbjct: 549  AGGAEENAPLHKLGGDAWSRARQKAAEKVRDVAAELLDIYAQRAAKEGFAFKHDREQYQL 608

Query: 584  FGARFGFDPTEGQRRAIQTVLDAMRQGQPMDHLVCADVGYGKTEVALRAAAAVAFAGHQV 643
            F   F F+ T  Q +AI  VL  M Q   MD LVC DVG+GKTEVA+RAA        QV
Sbjct: 609  FCDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVDNHKQV 668

Query: 644  AVMAPTSVLARQHLEVFRRRFAGFGIRLEPLTGAMTKTESDRVRAGLADGSVDIVIGTHA 703
            AV+ PT++LA+QH + FR RFA + +R+E L+   +  E  ++ A +A+G +DI+IGTH 
Sbjct: 669  AVLVPTTLLAQQHYDNFRDRFANWPVRIEMLSRFRSAKEQTQILAEVAEGKIDILIGTHK 728

Query: 704  LLSKDVRFQRLGLMVVDEEQRFGATQKQALKRRIKGVHSLALSATPIPRTLQGALAGLRG 763
            LL  DV+F+ LGL++VDEE RFG   K+ +K     V  L L+ATPIPRTL  A++G+R 
Sbjct: 729  LLQSDVKFKDLGLLIVDEEHRFGVRHKERIKAMRANVDILTLTATPIPRTLNMAMSGMRD 788

Query: 764  LSIIDTPPARRRPVRTAVTPRDPTTARAALLRELGRGGQVFCVTPRIADLGELEEWIRGL 823
            LSII TPPARR  V+T V   D    R A+LRE+ RGGQV+ +   + ++ +  E +  L
Sbjct: 789  LSIIATPPARRLAVKTFVREYDSLVVREAILREILRGGQVYYLYNDVENIQKAAERLAEL 848

Query: 824  VPSACIAVAHGRLGAAALDDAVMGFVDGESDILLATPIIESGIDIPRANTLLLFRPDLFG 883
            VP A IA+ HG++    L+  +  F     ++L+ T IIE+GIDIP ANT+++ R D FG
Sbjct: 849  VPEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFG 908

Query: 884  LGQLHQLRGRVGRGAVQGYAYLLTDPDHPLEERAARRLGSLEVIESLGGGFVLSMLDLDQ 943
            L QLHQLRGRVGR   Q YA+LLT     +   A +RL ++  +E LG GF L+  DL+ 
Sbjct: 909  LAQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEI 968

Query: 944  RGAGDLLGEDQSGHLRAVGTELYQRILADALRALR--RQPD----ARWDPEVTVAVPHGI 997
            RGAG+LLGE+QSG +  +G  LY  +L +A+ AL+  R+P          EV + +P  +
Sbjct: 969  RGAGELLGEEQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQTEVELRMPSLL 1028

Query: 998  PSAYIPEEELRIGLHRRIARTREAGELDALREEMEDRFGPLPVPMERLLAIAGLRCRCRA 1057
            P  +IP+   R+  ++RIA  +   EL+ ++ E+ DRFG LP P   LL IA LR + + 
Sbjct: 1029 PDDFIPDVNTRLSFYKRIASAKTENELEEIKVELIDRFGLLPDPARTLLDIARLRQQAQK 1088

Query: 1058 LGIASL 1063
            LGI  L
Sbjct: 1089 LGIRKL 1094