Pairwise Alignments

Query, 587 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Azospirillum sp. SherDot2

 Score =  186 bits (471), Expect = 1e-51
 Identities = 97/242 (40%), Positives = 154/242 (63%), Gaps = 1/242 (0%)

Query: 344 VLVFLVAPAIVVVPIAFTSSPFLDFPPPGYSLKWFE-VYFGSDLWLGATLRSFGVAFATA 402
           ++VFLV P + V+PI+F+S+ FL +P PG SL+W++ V   S  WL A   S  V     
Sbjct: 20  MMVFLVGPILAVIPISFSSAGFLSYPIPGLSLQWYDKVLAASGPWLPALRNSLIVGTGAM 79

Query: 403 ILATLIAGLAALALARSTSRWRGAIFALFLAPMIVPRIVIAVGLFYLFAQIGLVATDLGL 462
            LAT++  LAAL LAR+    R  +  L +APM+VP ++  V +++LFA+IGL A+  GL
Sbjct: 80  ALATVLGTLAALGLARNDLPVRSFLLGLLIAPMVVPVVISGVAMYFLFARIGLTASYAGL 139

Query: 463 VIGHTVLALPFAFVAIAAVVKGHDWRLDQAAATLGANRVQTLMRVTVPLIRGGLVAAFLF 522
           ++ H VL  PF  + + A ++  D  L +AA +LGA+ V+  + VT+PLI  G+++  LF
Sbjct: 140 ILAHAVLGAPFVVITVTATLRNFDTTLVRAAYSLGASPVRAFLTVTLPLILPGVLSGGLF 199

Query: 523 AFITSFDELTVAIFVSGGVKTTLPKQMWDDMILQLNPTLAAVSVVVFLIVMALLLIAERL 582
           AFI SFDE+ VA+F+ G  + TLP+QM+D +   ++P++ A+S ++  + +  + +  RL
Sbjct: 200 AFIFSFDEVVVALFIGGPEQRTLPRQMFDGIRDTIDPSILAMSTLLVGVTIVFMGLLARL 259

Query: 583 RR 584
            R
Sbjct: 260 GR 261



 Score = 70.5 bits (171), Expect = 8e-17
 Identities = 78/287 (27%), Positives = 122/287 (42%), Gaps = 47/287 (16%)

Query: 21  GPLWLAAPGIAFLAVFFLYPVLRLLGLSVQDADTGAWTGEHYARIVDTGVYFRVLMGTFR 80
           GP+    P     A F  YP+    GLS+Q      W  +  A    +G +   L  +  
Sbjct: 26  GPILAVIPISFSSAGFLSYPIP---GLSLQ------WYDKVLAA---SGPWLPALRNSLI 73

Query: 81  IAGLTALFSLLLGYPLAYWLAQ--LPERK--RGVMILAVMVPFWTSYLVKTFAWMVILGR 136
           +       + +LG   A  LA+  LP R    G++I  ++VP   S +   F +  I G 
Sbjct: 74  VGTGAMALATVLGTLAALGLARNDLPVRSFLLGLLIAPMVVPVVISGVAMYFLFARI-GL 132

Query: 137 TGVIGGLLAAGGLPQPEMLHNEFGVMIGMVHAML--PLAVLTMLPVMTGIDRRLVQAAET 194
           T    GL+ A                    HA+L  P  V+T+   +   D  LV+AA +
Sbjct: 133 TASYAGLILA--------------------HAVLGAPFVVITVTATLRNFDTTLVRAAYS 172

Query: 195 LGAAPGHAFWLVYFQLSLPGIAAAGLLTFISSLGFFIVPALLGGPQQTMLAQLIIAQIQE 254
           LGA+P  AF  V   L LPG+ + GL  FI S    +V   +GGP+Q  L + +   I++
Sbjct: 173 LGASPVRAFLTVTLPLILPGVLSGGLFAFIFSFDEVVVALFIGGPEQRTLPRQMFDGIRD 232

Query: 255 MLNWAFAGALATFMLAAALVTCWVYDRIFGLSTLSGEGSRRKKGGGS 301
            ++ +   A++T ++   +V         GL    G G+  K G  +
Sbjct: 233 TIDPSIL-AMSTLLVGVTIV-------FMGLLARLGRGTGSKPGSNA 271