Pairwise Alignments

Query, 589 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 1183 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2

 Score = 79.7 bits (195), Expect = 6e-19
 Identities = 67/209 (32%), Positives = 89/209 (42%), Gaps = 5/209 (2%)

Query: 4   LDSAVALYEAGRHAEAAVACLVLLEAGVR-----DADILNLLGASLVSTGNGDTAVGPLE 58
           L+ A  L+  GR  EA  A    + A  R       D L+LLG  +  TG  D A+  + 
Sbjct: 659 LNHAADLHRNGRPDEAEAAYRAAIAADPRREALGHPDALHLLGLLMHQTGRNDDALALIG 718

Query: 59  EAVRIAPAHLAARCNLALLRQQRRDWAAAERHFDVLALLDPAFRLGQERLGTVRQERGDL 118
           EA+RI PA   A  +L L+ +  +  A +   F     L PA+      LG V Q  G  
Sbjct: 719 EALRIDPAFPQAWNHLGLVHEMEKRHADSSFAFARALALHPAYPEALTHLGLVHQIGGRP 778

Query: 119 DGAVRALTRAVRLDPRSGLAWFNLASVRMLAGLFEEAVAGFRHAIAEDPAGALAHVQLGE 178
              +R   RA+ + P    A  NL     L G   EA   +R A+A  P  A A+  L  
Sbjct: 779 AEGMRLHRRAIAIQPDHIPAHANLGHACELTGQTSEATGHYRRALALQPESAEANNNLAT 838

Query: 179 MLLRLGEIDAAAEAFRRGLRLDPAAPNAA 207
           M      +D A    RR LR+DP    AA
Sbjct: 839 MATLANRLDEAKSHLRRALRVDPGFALAA 867



 Score = 67.8 bits (164), Expect = 2e-15
 Identities = 75/252 (29%), Positives = 102/252 (40%), Gaps = 42/252 (16%)

Query: 4   LDSAVALYEAGRHAEAAVACLVLLEAGVRDADILNLLGASLVSTGNGDTAV--------- 54
           L  AVA ++AGR AEA      +L    R+AD ++LLG   + +G+ + AV         
Sbjct: 8   LAQAVAHHQAGRAAEAERGYRDVLTKDPRNADAMHLLGVLALQSGHAEEAVTLIGKALAQ 67

Query: 55  ------------------GPLEEAVR-------IAPAHLAARCNL--ALLRQQRRDWAAA 87
                             G  +EAV+       + P     R NL  AL    R D   A
Sbjct: 68  TRGVADYWDNLGSALSAAGRPDEAVQAHHNATILDPQGAQRRHNLGNALAALGRHD--EA 125

Query: 88  ERHFDVLALLDPAFRLGQERLGTVRQERGDLDGAVRALTRAVRLDPRSGLAWFNLASVRM 147
           +R F     L P +      LG          GAV AL RAV+L P    A  NL     
Sbjct: 126 QRAFAAALALKPDYAKAWYNLGNGHAALHRYGGAVTALDRAVQLAPGMVEAHNNLGDALA 185

Query: 148 LAGLFEEAVAGFRHAIAEDPAGALAHVQLGEMLLRLGEIDAAAEAFRRGLRLDP----AA 203
           +AG  +EA+A  R      P  A A   LG +L +    ++A  A+R+ L+ +P    A 
Sbjct: 186 MAGRLDEAIAQHRLVTRHRPDDATAFYNLGAVLQQKSAFESAEIAYRQALKRNPRHSAAL 245

Query: 204 PNAADGLARCGR 215
            N    L R GR
Sbjct: 246 NNLGSVLKRLGR 257



 Score = 62.8 bits (151), Expect = 8e-14
 Identities = 61/212 (28%), Positives = 80/212 (37%), Gaps = 4/212 (1%)

Query: 9   ALYEAGRHAEAAVACLVLLEAGVRDADILNLLGASLVSTGNGDTAVGPLEEAVRIAPAHL 68
           AL  AGR  EA  A         + A   + LG +L + G  D A      A+ + P + 
Sbjct: 81  ALSAAGRPDEAVQAHHNATILDPQGAQRRHNLGNALAALGRHDEAQRAFAAALALKPDYA 140

Query: 69  AARCNLALLRQQRRDWAAAERHFDVLALLDPAFRLGQERLGTVRQERGDLDGAVRALTRA 128
            A  NL         +  A    D    L P        LG      G LD A+      
Sbjct: 141 KAWYNLGNGHAALHRYGGAVTALDRAVQLAPGMVEAHNNLGDALAMAGRLDEAIAQHRLV 200

Query: 129 VRLDPRSGLAWFNLASVRMLAGLFEEAVAGFRHAIAEDPAGALAHVQLGEMLLRLGEIDA 188
            R  P    A++NL +V      FE A   +R A+  +P  + A   LG +L RLG  D 
Sbjct: 201 TRHRPDDATAFYNLGAVLQQKSAFESAEIAYRQALKRNPRHSAALNNLGSVLKRLGRPDQ 260

Query: 189 AAEAFRRGLRLDP----AAPNAADGLARCGRY 216
           A    R+ L L P    A  N  + L   GRY
Sbjct: 261 AELCHRQALDLYPEFVEARYNLGNALQAQGRY 292



 Score = 60.1 bits (144), Expect = 5e-13
 Identities = 56/198 (28%), Positives = 80/198 (40%), Gaps = 2/198 (1%)

Query: 17  AEAAVACLVLLEAGVRDADILNLLGASLVSTGNGDTAVGPLEEAVRIAPAHLAARCNLAL 76
           A  A+   V L  G+ +A   N LG +L   G  D A+       R  P    A  NL  
Sbjct: 159 AVTALDRAVQLAPGMVEAH--NNLGDALAMAGRLDEAIAQHRLVTRHRPDDATAFYNLGA 216

Query: 77  LRQQRRDWAAAERHFDVLALLDPAFRLGQERLGTVRQERGDLDGAVRALTRAVRLDPRSG 136
           + QQ+  + +AE  +      +P        LG+V +  G  D A     +A+ L P   
Sbjct: 217 VLQQKSAFESAEIAYRQALKRNPRHSAALNNLGSVLKRLGRPDQAELCHRQALDLYPEFV 276

Query: 137 LAWFNLASVRMLAGLFEEAVAGFRHAIAEDPAGALAHVQLGEMLLRLGEIDAAAEAFRRG 196
            A +NL +     G +EEA A F  A+A+ P  A A   L  + L  G+I      + R 
Sbjct: 277 EARYNLGNALQAQGRYEEAAACFEEALAQQPDLATATYNLSLLALLHGDIARGWAGYERR 336

Query: 197 LRLDPAAPNAADGLARCG 214
                A PN    + R G
Sbjct: 337 FAAGEAVPNRRFPIPRWG 354



 Score = 52.8 bits (125), Expect = 8e-11
 Identities = 46/146 (31%), Positives = 58/146 (39%), Gaps = 4/146 (2%)

Query: 75  ALLRQQRRDWAAAERHFDVLALLDPAFRLGQERLGTVRQERGDLDGAVRALTRAVRLDPR 134
           A+   Q    A AER +  +   DP        LG +  + G  + AV  + +A+     
Sbjct: 11  AVAHHQAGRAAEAERGYRDVLTKDPRNADAMHLLGVLALQSGHAEEAVTLIGKALAQTRG 70

Query: 135 SGLAWFNLASVRMLAGLFEEAVAGFRHAIAEDPAGALAHVQLGEMLLRLGEIDAAAEAFR 194
               W NL S    AG  +EAV    +A   DP GA     LG  L  LG  D A  AF 
Sbjct: 71  VADYWDNLGSALSAAGRPDEAVQAHHNATILDPQGAQRRHNLGNALAALGRHDEAQRAFA 130

Query: 195 RGLRLDP----AAPNAADGLARCGRY 216
             L L P    A  N  +G A   RY
Sbjct: 131 AALALKPDYAKAWYNLGNGHAALHRY 156



 Score = 45.1 bits (105), Expect = 2e-08
 Identities = 43/147 (29%), Positives = 59/147 (40%), Gaps = 4/147 (2%)

Query: 15  RHAEAAVACLVLLEAGVRDADILNLLGASLVSTGNGDTAVGPL--EEAVRIAPAHLAARC 72
           RHA+++ A    L       + L  LG  LV    G  A G      A+ I P H+ A  
Sbjct: 743 RHADSSFAFARALALHPAYPEALTHLG--LVHQIGGRPAEGMRLHRRAIAIQPDHIPAHA 800

Query: 73  NLALLRQQRRDWAAAERHFDVLALLDPAFRLGQERLGTVRQERGDLDGAVRALTRAVRLD 132
           NL    +     + A  H+     L P        L T+      LD A   L RA+R+D
Sbjct: 801 NLGHACELTGQTSEATGHYRRALALQPESAEANNNLATMATLANRLDEAKSHLRRALRVD 860

Query: 133 PRSGLAWFNLASVRMLAGLFEEAVAGF 159
           P   LA +NL  + +  G   E  AG+
Sbjct: 861 PGFALAAWNLGLMDLADGRIAEGWAGY 887