Pairwise Alignments
Query, 491 a.a., hypothetical protein from Azospirillum sp. SherDot2
Subject, 1339 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2
Score = 159 bits (402), Expect = 6e-43
Identities = 160/558 (28%), Positives = 229/558 (41%), Gaps = 107/558 (19%)
Query: 22 LPEAATSFQAAAVLRPEHPVVWFLLGVTLRTLGRAEEAVAALHVALRLQPGHPDTLFHLA 81
+ ++A + A L P P LG+ L+ LG+ ++A A +QP H D L +L
Sbjct: 225 MEDSAERYADALRLEPRDPFCLNGLGLCLKALGQLDDAATCFDAATAIQPDHADALDNLG 284
Query: 82 SVHLERRRPECALPALRRLIALRPGHEGAAFALGSALMALDDPEAAERAFRLAALLQPDG 141
SV + + RP A R+ + RP GA LG+A A A RA+ +A L P
Sbjct: 285 SVRIAQGRPAEAEALHRQAVHHRPDFAGAWNNLGNARHAAGRTADAWRAWHVAVALAPAL 344
Query: 142 AAVNNNVGAAILAQRRPGAA--------------------LGH--------------FRR 167
A + N+G A+ + R A LGH +R
Sbjct: 345 AETHTNLGNALRSAERFTEAERSQRRAIRLAPLESPSRNNLGHLRQGRHDYAGAADCYRS 404
Query: 168 AVRIDPSWPEHRKNLGVAQ----------------------------------LMRGELE 193
A+ +DP++ E NLG+A+ L G+L+
Sbjct: 405 ALALDPAYGEAWSNLGLARQRLGDSGEAERCYDRALTLRPDLSLCHFNKGLLRLEAGDLD 464
Query: 194 EGFRDYEWRTGQAVWQWNRSFPGKPLWDGGPLAGRTILVHYEQGLGDSVQFVRYFPLLKA 253
G+ Y WR G R P P W G L GR +++ EQG+GD++ F P L
Sbjct: 465 RGWPGYAWRFGSGQVGQGRQ-PRAPAWRGEDLTGRRLMIWGEQGVGDTILFSALCPELAG 523
Query: 254 RGARTVFECQPLLKQLLA--------TAPGIDMLVARGETLPDFDCCLSLMSLPHRCGTR 305
R T+ E L L A A +D +PD+D + + SLP R
Sbjct: 524 RAVSTILEIDRRLVPLFARSFPTLRVRAEAMDGQGREAMAIPDYDRHVPMGSLPRVLRRR 583
Query: 306 ADTIPQGIPYLRTDPERAAFWRER--VLGHARPGELRVGVQWRAD--GDDRS---IPLDC 358
P +L D WRER VLG PG LR+G+ WR+ +RS +PLD
Sbjct: 584 LADFPARPSWLVPDAGLVERWRERLAVLG---PG-LRIGIGWRSQMMTSERSAAYLPLDA 639
Query: 359 FEALSQVPGLRLFSLQQAVGLDELERLGARFGI-----VDLPGRRPGAEGFLDTAALAEA 413
+ L +PG+ LQ +E+ + RFGI DL + + F AAL
Sbjct: 640 WAPLFALPGIHWVMLQYGEVEEEVRQAEKRFGIRLHRWDDLDRK----DDFDGVAALIAG 695
Query: 414 MDLVVVCDSVVGHVAGVLGRPVFLVLPWLGDWRWMKHPDCTPWYPAHRLFRMARPNDWHG 473
+DLV+ VG +AG LG PV+ DW + PWYP+ RLF+ RP +
Sbjct: 696 LDLVISPAMSVGELAGALGTPVWRF--GTRDWTQL-GAGVRPWYPSMRLFQ-PRPGE--- 748
Query: 474 VMLRVAEAVADEVRRARS 491
++ +AD R RS
Sbjct: 749 ---PLSATMADMARALRS 763
Score = 140 bits (354), Expect = 2e-37
Identities = 157/486 (32%), Positives = 199/486 (40%), Gaps = 34/486 (6%)
Query: 11 NRGLLRVERSELPEAATSFQAAAVLRPEHPVVWFLLGVTLRTLGRAEEAVAALHVALRLQ 70
N G+ + PEAAT + LRP W L L R EA A A L
Sbjct: 859 NLGVALQADAAAPEAATLHRRTTRLRPMQAEGWGNLAAALLAARRFAEAANACTRAAALA 918
Query: 71 PGHPDTLFHLASVHLERRRPECALPALRRLIALRPGHEGAAFALGSALMALDDPEAAERA 130
P L + R A RR + L P LG AL L + A A
Sbjct: 919 PALAGVLTTAGAAAKGLGRFAEAARQSRRSLRLVPASPKGWSNLGMALAGLGRWDDALYA 978
Query: 131 FRLAALLQPDGAAVNNNVGAAIL--AQRRPGAALGHFRRAVRIDPSWPEHRKNLGVAQLM 188
R A L PD V N G +L +RR A L R +R+ P E R N + +L
Sbjct: 979 HRHAMALAPDLPDVLVNHGHTLLMRGERRLAALLAD--RTLRLAPGRAEARMNRALLRLA 1036
Query: 189 RGELEEGFRDYEWR--TGQAVWQWNRSFPGKPLWDGGPLAGRTILVHYEQGLGDSVQFVR 246
G+L+ G+ DY R TG AV +R P W G PLAGR ILV EQGLGD + F
Sbjct: 1037 DGDLDGGWADYAHRFATGDAV---SRRLD-IPEWQGEPLAGRRILVWGEQGLGDEILFGT 1092
Query: 247 YFPLLKARGARTVFECQPLLKQLLATAPGIDMLVARGETLPDFDCCLSLMSLPHRCGTRA 306
P L + + EC P L +L A A + A DC L S+ R
Sbjct: 1093 ALPDLLGQAGTVIVECDPRLARLFARALPAAEVRAPSADPRGADCHAPLGSVAARLRPDL 1152
Query: 307 DTIPQGIPYLRTDPERAAFWRERV--LGHARPGELRVGVQWR-----ADGDDRSIPLDCF 359
P L DP AA WRER+ LG LRVG+ WR AD + +
Sbjct: 1153 RRFRATSPLLAADPGLAAGWRERLSTLGPC----LRVGICWRSSRMTADRAGAYSRITQW 1208
Query: 360 EALSQVPGLRLFSLQQAVGLDELERLGARFGIV-----DLPGRRPGAEGFLDTAALAEAM 414
+ +PG+ SLQ E E RFG V DL +R +G AAL +
Sbjct: 1209 SPVFGIPGITFVSLQYDGHDAEREEALHRFGTVLHHWPDL-DQRNDLDG---VAALMSGL 1264
Query: 415 DLVVVCDSVVGHVAGVLGRPVFLVLPWLGDWRWMKHPDCTPWYPAHRLFRMARPNDWHGV 474
DLV+ + VG +A LG PV+ + GDW + PW+P L + R D
Sbjct: 1265 DLVISAPTAVGELAAALGVPVWRI-AGAGDWSAL-GTAVRPWFPTMSL--IGRSGDHDAA 1320
Query: 475 MLRVAE 480
+ VA+
Sbjct: 1321 LAAVAQ 1326
Score = 70.1 bits (170), Expect = 5e-16
Identities = 59/176 (33%), Positives = 77/176 (43%), Gaps = 2/176 (1%)
Query: 24 EAATSFQAAAVLRPEHPVVWFLLGVTLRTLGRAEEAVAALHVALRLQPGHPDT--LFHLA 81
+A S AA L P P W V+LR LGR +EAV AL +A L G D L LA
Sbjct: 157 DALASHTRAADLLPGDPRPWTNRAVSLRQLGRLDEAVEALRMASALGGGAGDASALSALA 216
Query: 82 SVHLERRRPECALPALRRLIALRPGHEGAAFALGSALMALDDPEAAERAFRLAALLQPDG 141
+ R E + + L P LG L AL + A F A +QPD
Sbjct: 217 AALHAAGRMEDSAERYADALRLEPRDPFCLNGLGLCLKALGQLDDAATCFDAATAIQPDH 276
Query: 142 AAVNNNVGAAILAQRRPGAALGHFRRAVRIDPSWPEHRKNLGVAQLMRGELEEGFR 197
A +N+G+ +AQ RP A R+AV P + NLG A+ G + +R
Sbjct: 277 ADALDNLGSVRIAQGRPAEAEALHRQAVHHRPDFAGAWNNLGNARHAAGRTADAWR 332
Score = 59.7 bits (143), Expect = 6e-13
Identities = 57/185 (30%), Positives = 72/185 (38%)
Query: 10 FNRGLLRVERSELPEAATSFQAAAVLRPEHPVVWFLLGVTLRTLGRAEEAVAALHVALRL 69
F L + L A ++ P H LLGV +AV + A+ L
Sbjct: 7 FAEALRHHQDGALDAAEPLYRRVLQAEPLHADALHLLGVLNHQRNNNLQAVELIAKAVDL 66
Query: 70 QPGHPDTLFHLASVHLERRRPECALPALRRLIALRPGHEGAAFALGSALMALDDPEAAER 129
PG D +L V R A A RR + PGH GA F LG L A A
Sbjct: 67 APGVADYHANLGIVLQRLDRLAEAEAAQRRALERDPGHVGAHFNLGLVLAAQGRLAEAAD 126
Query: 130 AFRLAALLQPDGAAVNNNVGAAILAQRRPGAALGHFRRAVRIDPSWPEHRKNLGVAQLMR 189
+ AA L PD A + N+GAA+ R AL RA + P P N V+
Sbjct: 127 QYAEAARLSPDLADAHLNLGAALQGLGRADDALASHTRAADLLPGDPRPWTNRAVSLRQL 186
Query: 190 GELEE 194
G L+E
Sbjct: 187 GRLDE 191
Score = 51.6 bits (122), Expect = 2e-10
Identities = 40/157 (25%), Positives = 60/157 (38%)
Query: 43 WFLLGVTLRTLGRAEEAVAALHVALRLQPGHPDTLFHLASVHLERRRPECALPALRRLIA 102
WF + G + A L+ +P H D L L ++ +R A+ + + +
Sbjct: 6 WFAEALRHHQDGALDAAEPLYRRVLQAEPLHADALHLLGVLNHQRNNNLQAVELIAKAVD 65
Query: 103 LRPGHEGAAFALGSALMALDDPEAAERAFRLAALLQPDGAAVNNNVGAAILAQRRPGAAL 162
L PG LG L LD AE A R A P + N+G + AQ R A
Sbjct: 66 LAPGVADYHANLGIVLQRLDRLAEAEAAQRRALERDPGHVGAHFNLGLVLAAQGRLAEAA 125
Query: 163 GHFRRAVRIDPSWPEHRKNLGVAQLMRGELEEGFRDY 199
+ A R+ P + NLG A G ++ +
Sbjct: 126 DQYAEAARLSPDLADAHLNLGAALQGLGRADDALASH 162