Pairwise Alignments
Query, 491 a.a., hypothetical protein from Azospirillum sp. SherDot2
Subject, 640 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2
Score = 252 bits (643), Expect = 3e-71
Identities = 179/486 (36%), Positives = 234/486 (48%), Gaps = 31/486 (6%)
Query: 16 RVERSELPEAATSFQAAAVLRPEHPVVWFLLGVTLRTLGRAEEAVAALHVALRLQPGHPD 75
R+ L +A +++AA L P + LG T +A AA ALRL P HP
Sbjct: 162 RLLAGRLADARAAYRAAVALEPATVQAYVNLGATASREKNHAQAAAAYRRALRLSPDHPG 221
Query: 76 TLFHLASVHLERRRPECALPALRRLIALRPGHEGAAFALG----SALMALDDPEAAERAF 131
+LAS E + A+ RR +AL+P H LG S DD A
Sbjct: 222 AWNNLASAVWELNDGQGAVRFCRRSVALKPDHPDPYANLGYVQRSQARNGDDFAEAATLC 281
Query: 132 RLAALLQPDGAAVNNNVGAAILAQRRPGAALGHFRRAVRIDPSWPEHRKNLGVAQLMRGE 191
R A + P + NN+G L + A F R + +P P+ R NL +A L G
Sbjct: 282 RRALRVNPSHVSALNNLGIVNLDLGQLDEAERLFNRTLAAEPKHPDARFNLSLALLKAGR 341
Query: 192 LEEGFRDYE--WRTGQAVWQWNRSFPGK-PLWDGGPLAGRTILVHYEQGLGDSVQFVRYF 248
L+EG+ YE W TGQ + G+ W G PL G TIL+H EQG GD++ FVRY
Sbjct: 342 LKEGWDHYEARWETGQLP-----TVNGQLRAWQGEPLNGATILLHAEQGHGDTLHFVRYA 396
Query: 249 PLLKARGARTVFECQPLLKQLLATAPGIDMLVARGETLPDFDCCLSLMSLPHRCGTRADT 308
PL+ A+G R V QP LK+L+A PG+ + A + P + LMSLP GT T
Sbjct: 397 PLVAAQGGRVVLAVQPSLKRLVAGMPGVAAVHALTDPFPKPEFHCPLMSLPRLLGTELGT 456
Query: 309 IPQGIPYLRTDPERAAFWRERVLGHARPGE-LRVGVQWRAD-----------GDDRSIPL 356
IP IPYL E W LG PG LRVG+ W D RS+ L
Sbjct: 457 IPGAIPYLYPPAEAIGKW----LGQPLPGAGLRVGLVWSGDPRPGLLRANLTDRRRSMSL 512
Query: 357 DCFEALSQVPGLRLFSLQQAVGLDELERLGARFGIVDLPGRRPGAEGFLDTAALAEAMDL 416
L++VP LR +LQ +L A I D G F DTAAL +DL
Sbjct: 513 HDLAPLAEVPDLRFVNLQMGGPAAQLTEPPAGMDIHDPMG---AITDFADTAALVMRLDL 569
Query: 417 VVVCDSVVGHVAGVLGRPVFLVLPWLGDWRWMKHPDCTPWYPAHRLFRMARPNDWHGVML 476
V+ D+ V H+ G LG+PV+++ + G WRW++ D TPWYP RLFR P DW V+
Sbjct: 570 VITVDTSVAHLVGALGKPVWVMSRYDGCWRWLQDRDDTPWYPTMRLFRQTAPGDWTTVIR 629
Query: 477 RVAEAV 482
RVA+A+
Sbjct: 630 RVADAL 635
Score = 56.2 bits (134), Expect = 3e-12
Identities = 50/195 (25%), Positives = 73/195 (37%), Gaps = 37/195 (18%)
Query: 25 AATSFQAAAVLRPEHPVVWFLLGVT----------------------------------L 50
A T ++A P H V LLGVT
Sbjct: 38 AGTLYRAILSAEPSHGDVLHLLGVTALQAGAAEAASRWLRRALVVDRAQAYYRNSLGEAF 97
Query: 51 RTLGRAEEAVAALHVALRLQPGHPDTLFHLASVHLERRRPECALPALRRLIALRPGHEGA 110
R LGR ++A +AL L P +P++ LA++H + + A L R LRP
Sbjct: 98 RALGRPDKAREQYRLALTLNPAYPES---LANLHRQPLPGDNAPALLERFCRLRPATASE 154
Query: 111 AFALGSALMALDDPEAAERAFRLAALLQPDGAAVNNNVGAAILAQRRPGAALGHFRRAVR 170
A+ + + A A+R A L+P N+GA ++ A +RRA+R
Sbjct: 155 LLAVADSRLLAGRLADARAAYRAAVALEPATVQAYVNLGATASREKNHAQAAAAYRRALR 214
Query: 171 IDPSWPEHRKNLGVA 185
+ P P NL A
Sbjct: 215 LSPDHPGAWNNLASA 229
Score = 48.1 bits (113), Expect = 9e-10
Identities = 33/110 (30%), Positives = 49/110 (44%), Gaps = 1/110 (0%)
Query: 74 PDTLFHLASVHLERRRPECALPAL-RRLIALRPGHEGAAFALGSALMALDDPEAAERAFR 132
PD LAS + + A L R +++ P H LG + EAA R R
Sbjct: 18 PDVRSMLASAVARHKAGDAAAGTLYRAILSAEPSHGDVLHLLGVTALQAGAAEAASRWLR 77
Query: 133 LAALLQPDGAAVNNNVGAAILAQRRPGAALGHFRRAVRIDPSWPEHRKNL 182
A ++ A N++G A A RP A +R A+ ++P++PE NL
Sbjct: 78 RALVVDRAQAYYRNSLGEAFRALGRPDKAREQYRLALTLNPAYPESLANL 127
Score = 25.4 bits (54), Expect = 0.006
Identities = 26/110 (23%), Positives = 40/110 (36%), Gaps = 12/110 (10%)
Query: 90 PECALPALRRLIALRPGHEGAAFALGSALMALDDPEAAERAFRLAALLQPDGAAVNNNVG 149
P LP +R ++A A A AA +R +P V + +G
Sbjct: 13 PAATLPDVRSMLASAVARHKAGDA------------AAGTLYRAILSAEPSHGDVLHLLG 60
Query: 150 AAILAQRRPGAALGHFRRAVRIDPSWPEHRKNLGVAQLMRGELEEGFRDY 199
L AA RRA+ +D + +R +LG A G ++ Y
Sbjct: 61 VTALQAGAAEAASRWLRRALVVDRAQAYYRNSLGEAFRALGRPDKAREQY 110