Pairwise Alignments

Query, 293 a.a., Ribose import binding protein RbsB from Azospirillum sp. SherDot2

Subject, 369 a.a., sugar ABC transporter substrate-binding protein from Paraburkholderia sabiae LMG 24235

 Score =  183 bits (464), Expect = 6e-51
 Identities = 109/289 (37%), Positives = 163/289 (56%), Gaps = 13/289 (4%)

Query: 7   AATVAATALLASANAQAADTIALVVSTLNNPFFVTLKNGAEAKAKALGYNLLVLDSQNDP 66
           +    A+A  AS+ A     I   ++TLNN FFV LK G E  +K  G+ L+  ++  D 
Sbjct: 50  SGAAVASAAPASSAAGGKTKIGFSIATLNNAFFVGLKLGVEKGSKDQGFELVQTNANGDA 109

Query: 67  AKELANVEDVVNKKVKLLLVNPTDSDAVRSAVRSANRAKIPVVTLDRSANGGEVASHIAS 126
            +++ +  +++++ +  L++NP DS A+   V+ AN+  IPV TLDR ++GG+V S +AS
Sbjct: 110 QQQVNDANNLLSQGITALVLNPIDSKAIIPVVQKANQMNIPVFTLDRGSDGGKVTSFVAS 169

Query: 127 DNVAGGRMAGQLVVDML-----KGQGAVVELQGLPGASAARDRGKGFHEAVDKASGLKVV 181
           DNVA G    + + D L       +G VV+L GL G +AA DR KGF + + K   +KVV
Sbjct: 170 DNVALGATGAKWIADQLTKRYGSAKGNVVDLIGLVGTTAATDREKGFSDEIAKYPDIKVV 229

Query: 182 ASQPADFDRTKALNVMENILQAQQKIDVVFAHNDEMALGAAKAIQASGRKIP-------- 233
           A Q   FD+ K+LN M +ILQ   +ID VF  ND+  +GA KAI  +GR  P        
Sbjct: 230 ARQEGAFDQEKSLNAMTSILQKFPQIDAVFGANDDNTVGAEKAIDNAGRYKPAGDKDHIL 289

Query: 234 VVGFDGTDEGVAAVNAGTLTATVAQQAGLIGEKGVETADKVLKGEKVPA 282
           V+G DGT + ++A+ AG   AT++Q    +  K +        G+ VPA
Sbjct: 290 VIGADGTAQALSAIRAGKQDATISQNPIEMAAKSLSFIADNAAGKSVPA 338



 Score = 24.6 bits (52), Expect = 0.003
 Identities = 41/187 (21%), Positives = 71/187 (37%), Gaps = 27/187 (14%)

Query: 94  VRSAVRSANRAKIP---VVTLDRSANGGEVASHIASDNVAGGRMAGQLVVDMLKGQGAVV 150
           + +A+   ++++ P       D SA+G  VAS   + + AGG+      +  L     V 
Sbjct: 25  IAAALSGCSKSESPSSSTAASDASASGAAVASAAPASSAAGGKTKIGFSIATLNNAFFV- 83

Query: 151 ELQGLPGASAARDRGKGFHEAVDKASGLKVVASQPADFDRTKALNVMENILQAQQKIDVV 210
              GL        + +GF      A+G           D  + +N   N+L   Q I  +
Sbjct: 84  ---GLKLGVEKGSKDQGFELVQTNANG-----------DAQQQVNDANNLL--SQGITAL 127

Query: 211 FAHNDEMALGAAKAIQASGRKIPVVGFDGTDEGVAAVNAGTLTATVAQQAGLIGEKGVE- 269
             +  +         +A+   IPV   D   +G      G +T+ VA     +G  G + 
Sbjct: 128 VLNPIDSKAIIPVVQKANQMNIPVFTLDRGSDG------GKVTSFVASDNVALGATGAKW 181

Query: 270 TADKVLK 276
            AD++ K
Sbjct: 182 IADQLTK 188