Pairwise Alignments

Query, 293 a.a., Ribose import binding protein RbsB from Azospirillum sp. SherDot2

Subject, 312 a.a., substrate-binding domain-containing protein from Pectobacterium carotovorum WPP14

 Score =  139 bits (349), Expect = 1e-37
 Identities = 91/268 (33%), Positives = 145/268 (54%), Gaps = 9/268 (3%)

Query: 1   MRKLLTAATVAATALLASANAQAA-DTIALVVSTLNNPFFVTLKNGAEAKAKALGYNLLV 59
           M+K+++ + +A  AL  S  AQA  + I      L  PF V ++  A   AK LG NL V
Sbjct: 1   MKKIISVSAIAI-ALGLSGFAQAQNEQIVFSTPNLAMPFEVHMQRTAVKAAKELGVNLQV 59

Query: 60  LDSQNDPAKELANVEDVVNKKVKLLLVNPTDSDAVRSAVRSANRAKIPVVTLDRSANGGE 119
           LD Q    K+ A++E+ + +  +  +V+P D +AV SAV     AK+PVVTLDRS    +
Sbjct: 60  LDGQGSSPKQAADLENAITRGAQGFVVSPNDVNAVSSAVTDIQDAKLPVVTLDRSVKTEK 119

Query: 120 VASHIASDNVAGGRMAGQLVVDMLKGQGAVVELQGLPGASAARDRGKGFHEAVDKASGLK 179
              H  ++N  GG+     V         ++ L G PG+S+  +R +G  +++ KA G K
Sbjct: 120 AVPHFGANNYKGGQAIADYVKTKFPDGAEIILLTGQPGSSSNIERTQGIRDSL-KAGGSK 178

Query: 180 --VVASQPADFDRTKALNVMENILQA-QQKIDVVFAHNDEMALGAAKAIQASGRK---IP 233
             +VA Q  ++ R++ + ++E++  +  ++  V+ + ND+MALGA +A+Q  G K   + 
Sbjct: 179 YHIVADQTGNWMRSEGMRIVESVFPSLPKRPQVILSANDDMALGAIEALQGQGLKPGDVM 238

Query: 234 VVGFDGTDEGVAAVNAGTLTATVAQQAG 261
           V GFD   E +A V  G L  T  Q+ G
Sbjct: 239 VTGFDAVPEALARVRDGWLAVTADQRPG 266