Pairwise Alignments

Query, 293 a.a., Ribose import binding protein RbsB from Azospirillum sp. SherDot2

Subject, 313 a.a., D-ribose ABC transporter substrate-binding protein from Pectobacterium carotovorum WPP14

 Score =  154 bits (388), Expect = 3e-42
 Identities = 101/284 (35%), Positives = 153/284 (53%), Gaps = 5/284 (1%)

Query: 1   MRKLLTAATVAATALLASANAQAADT--IALVVSTLNNPFFVTLKNGAEAKAKALGYNLL 58
           M+     +++ A     SA A AAD   IA++  + +NPFF     GA  KA  LGY  L
Sbjct: 1   MKSYRLKSSLLAIMFSFSAGAFAADNGLIAIITPSHDNPFFKAEAEGARTKAIELGYTTL 60

Query: 59  VLDSQNDPAKELANVEDVVNKKVKLLLVNPTDSDAVRSAVRSANRAKIPVVTLDRSANGG 118
           V    +D +K+   +E  + +K K ++++   +DA    ++ A  A IP   +DR  N  
Sbjct: 61  VASHDDDVSKQNQLIETAIARKAKAIILDNAGADATIGPLKKAKAAGIPAFLIDREINET 120

Query: 119 EVA-SHIASDNVAGGRMAGQLVVDMLKGQGAVVELQGLPGASAARDRGKGFHEAVDKASG 177
            VA + I S+N  G ++  +  V+++  +G  VEL G    + A  R +G+H+ +D+ S 
Sbjct: 121 GVAVAQIVSNNYQGAQLGAEKFVELMGQKGKYVELIGRESDTNAHVRSQGYHDVIDQYSD 180

Query: 178 LKVVASQPADFDRTKALNVMENILQAQQKIDVVFAHNDEMALGAAKAIQASGR-KIPVVG 236
           +K VA Q A++ +T+A   ME ILQA   I  V + ND MALGA  A++A+GR  + VVG
Sbjct: 181 MKRVARQTANWSQTEAFTRMEAILQANPDITGVISGNDTMALGAEAALKAAGRHDVIVVG 240

Query: 237 FDGTD-EGVAAVNAGTLTATVAQQAGLIGEKGVETADKVLKGEK 279
           FDG+D    + +N G + ATV Q      +  VE AD  LK  K
Sbjct: 241 FDGSDYVRDSIINKGNIKATVLQPGWQQAQMAVEQADYYLKNGK 284