Pairwise Alignments

Query, 293 a.a., Ribose import binding protein RbsB from Azospirillum sp. SherDot2

Subject, 309 a.a., sugar ABC transporter substrate-binding protein from Agrobacterium fabrum C58

 Score =  144 bits (362), Expect = 3e-39
 Identities = 98/304 (32%), Positives = 169/304 (55%), Gaps = 18/304 (5%)

Query: 1   MRKLLTAATVAATALLASANAQAADTIALVVSTLNNPFFVTLKNGAEAKAKAL-GYNLLV 59
           M+K +  A  A + LL +A    A+T+ + ++  ++ F   L+NG    +K L G  L V
Sbjct: 1   MKKFIIGA--AMSVLLGTA--AHAETVGVSMALFDDNFLTVLRNGMLDYSKELKGVTLQV 56

Query: 60  LDSQNDPAKELANVEDVVNKKVKLLLVNPTDSDAVRSAVRSANRAKIPVVTLDR------ 113
            D+QND AK+ + +++ +  KV  ++VNP D+DA  +  + A  AKIP+V ++R      
Sbjct: 57  EDAQNDVAKQQSQIQNFIASKVDAIIVNPVDTDATAAMSKLAADAKIPLVYVNRQPVNVD 116

Query: 114 SANGGEVASHIASDNVAGGRMAGQLVVDMLKGQGAVVELQGLPGASAARDRGKGFHEAV- 172
           S   G+  + +ASD    G +  + V  +L G+G  V + G     AAR R +   + + 
Sbjct: 117 SLPDGQ--AFVASDETVAGTLEAKEVCRLLGGKGNAVIMMGELSNQAARMRTQSAKDVLK 174

Query: 173 -DKASGLKVVASQPADFDRTKALNVMENILQAQQKIDVVFAHNDEMALGAAKAIQASGRK 231
            D+  G+ VV  Q A++ RT+  +++ N L +  + + V A+NDEMA+GA +A++A+G+ 
Sbjct: 175 TDECKGISVVEEQTANWQRTQGSDLVTNWLSSGIEFNAVIANNDEMAIGAIQALKAAGKD 234

Query: 232 IP---VVGFDGTDEGVAAVNAGTLTATVAQQAGLIGEKGVETADKVLKGEKVPAFTPVEL 288
           +    V G D T + +AA+ AG L  TV Q A   G+  ++ A K++KG+K+     +  
Sbjct: 235 MKSYVVAGVDATQDALAAMQAGDLDVTVFQDAAGQGKGALDAALKLVKGDKIEKKVYIPF 294

Query: 289 KMVT 292
           ++VT
Sbjct: 295 QLVT 298