Pairwise Alignments

Query, 279 a.a., Nopaline-binding periplasmic protein from Azospirillum sp. SherDot2

Subject, 253 a.a., transporter substrate-binding domain-containing protein from Pseudomonas fluorescens SBW25

 Score =  145 bits (367), Expect = 7e-40
 Identities = 90/256 (35%), Positives = 134/256 (52%), Gaps = 27/256 (10%)

Query: 23  AKDAKKLRIASEGAFAPWNGMDSSGKLVGFEIDLAWDLCKRIEADCELVAMDWDGMIPSL 82
           A  A+ LRIASEGA+ P+N +DS+  L GF+ID+A  LC+R++  C  V  DW+GMIP+L
Sbjct: 22  AAHAETLRIASEGAYPPFNYVDSTNTLHGFDIDIANALCERMKVTCTFVTQDWEGMIPAL 81

Query: 83  QQGKIDAIMAGMTITDERKKVIAFAGPYGTEQSTFATLKSSKLAGAGVGAERVDLADEAA 142
              K DAI+A M +T+ERKK IAF   Y     + A    S     G+   + D      
Sbjct: 82  LAKKYDAIVASMNVTEERKKKIAFTNRYYRTPLSVAVANDS-----GIRDAQTD------ 130

Query: 143 AKPAVAKLAELLKGKTVGVQTSTIQVDFLEKY--LPDVTVRNYDKIDNAAIDLAAGRVDA 200
                       KG TVG Q+ + Q  + E+       TV+ Y   D AA DLAAGR+D 
Sbjct: 131 -----------FKGLTVGAQSYSTQAIYAEERYGAAGATVKLYPSQDEAASDLAAGRLDG 179

Query: 201 IFGDRSPVEALMRAAGTDRMTLFGPAMTRGVLGEGMGVGLRKADAELKGRLDKAIADANK 260
           +  D+ P+ A + +AG D   + G             + +R+ D  L+ RL++A+ +   
Sbjct: 180 VIADKYPLLAWVESAGKDCCKVLGDIYGTNT---DAAIAVRQEDVALRERLNRALDEIVA 236

Query: 261 DGTIATLSQKHFGYDV 276
           DGT   ++ ++F +D+
Sbjct: 237 DGTYKKIASRYFAFDI 252