Pairwise Alignments

Query, 600 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 640 a.a., Photosystem I assembly protein Ycf3 from Azospirillum sp. SherDot2

 Score =  405 bits (1041), Expect = e-117
 Identities = 252/614 (41%), Positives = 337/614 (54%), Gaps = 68/614 (11%)

Query: 19  GAAALAEGEAVLAASLFTTAALLAPHRASIWHNLAEARRALGQPAGAAQAYHHALRLRPA 78
           G  AL  G A  A+     A ++   +A   ++L EA RALG+P  A + Y  AL L PA
Sbjct: 60  GVTALQAGAAEAASRWLRRALVVDRAQAYYRNSLGEAFRALGRPDKAREQYRLALTLNPA 119

Query: 79  YPKAWAGL----------ASLLLKSRRFKAA--------------------ARAAVR-AL 107
           YP++ A L           +LL +  R + A                    ARAA R A+
Sbjct: 120 YPESLANLHRQPLPGDNAPALLERFCRLRPATASELLAVADSRLLAGRLADARAAYRAAV 179

Query: 108 ALDPGFAEAWSVAGSILLDRRAMERLPIVLRRAVRLAQDNPLPWLALAGGLGETAEPALP 167
           AL+P   +A+   G+     +   +     RRA+RL+ D+P  W  LA  + E  +    
Sbjct: 180 ALEPATVQAYVNLGATASREKNHAQAAAAYRRALRLSPDHPGAWNNLASAVWELNDGQGA 239

Query: 168 LACVRRAVALSPDRPAGYVNHAGLLIRLGRLDAAQALHGRLRRLAPLEGHAEAGDSLVAT 227
           +   RR+VAL PD P  Y N       LG +  +QA +G                     
Sbjct: 240 VRFCRRSVALKPDHPDPYAN-------LGYVQRSQARNG--------------------- 271

Query: 228 LRGDFATALSLARRSLSLQPASPAALINLSLAEHGSGMTEPARLGNERALALQPESDVAR 287
              DFA A +L RR+L + P+  +AL NL +     G  + A     R LA +P+   AR
Sbjct: 272 --DDFAEAATLCRRALRVNPSHVSALNNLGIVNLDLGQLDEAERLFNRTLAAEPKHPDAR 329

Query: 288 FNLSMVLLAEGDFAKGWRLYESRWRMERV-AYPAHAPRWTGGNPAGRSLLLVAEQGQGDT 346
           FNLS+ LL  G   +GW  YE+RW   ++         W G    G ++LL AEQG GDT
Sbjct: 330 FNLSLALLKAGRLKEGWDHYEARWETGQLPTVNGQLRAWQGEPLNGATILLHAEQGHGDT 389

Query: 347 LQFVRYAPMLAALGAHVHLMVQPALVRLLSGLPGIASVRSLTEPPPACDACIPLLSLPLV 406
           L FVRYAP++AA G  V L VQP+L RL++G+PG+A+V +LT+P P  +   PL+SLP +
Sbjct: 390 LHFVRYAPLVAAQGGRVVLAVQPSLKRLVAGMPGVAAVHALTDPFPKPEFHCPLMSLPRL 449

Query: 407 FGTGLATIPASVPYLSPPGQERAAWKRRLDGSPGGEGGLKVGLVWAGSAHDEQFVAHMVD 466
            GT L TIP ++PYL PP +    W     G P    GL+VGLVW+G        A++ D
Sbjct: 450 LGTELGTIPGAIPYLYPPAEAIGKWL----GQPLPGAGLRVGLVWSGDPRPGLLRANLTD 505

Query: 467 RRRSLPLAALAPLAGIPGVRFYSLQKGPPASEAR--TSGLDLVDWMDEVEDFADTAALVA 524
           RRRS+ L  LAPLA +P +RF +LQ G PA++     +G+D+ D M  + DFADTAALV 
Sbjct: 506 RRRSMSLHDLAPLAEVPDLRFVNLQMGGPAAQLTEPPAGMDIHDPMGAITDFADTAALVM 565

Query: 525 ELDLVISVDTSVCHLAGALGRPVWMLSRHDACWRWLRNRSDSPWYPTMRLFRQDRPGDWP 584
            LDLVI+VDTSV HL GALG+PVW++SR+D CWRWL++R D+PWYPTMRLFRQ  PGDW 
Sbjct: 566 RLDLVITVDTSVAHLVGALGKPVWVMSRYDGCWRWLQDRDDTPWYPTMRLFRQTAPGDWT 625

Query: 585 PVILRVRTALERWA 598
            VI RV  AL + A
Sbjct: 626 TVIRRVADALRQLA 639