Pairwise Alignments

Query, 252 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 250 a.a., ABC transporter, substrate-binding protein (cluster 3, basic aa/glutamine/opines) from Variovorax sp. SCN45

 Score = 64.7 bits (156), Expect = 2e-15
 Identities = 68/257 (26%), Positives = 108/257 (42%), Gaps = 24/257 (9%)

Query: 7   NAPRRLPALLLALLALLGLCTPARA--EYWTVASEDHFPPYNYSFNGNRTGIDTEIVNAL 64
           N  R L A  L+  A  GL   A+A  E   VA++  FPP  +  NG RTG D E+V A+
Sbjct: 2   NTRRTLVAAALSGFAFFGLAGMAQAQGEPLRVATDATFPPMEFVENGKRTGFDVELVEAI 61

Query: 65  LKELNVTPVHRPLSWTEV-----VQSMDENTADIGFQFI-ASPTRFAQYNMIGPFRTGTT 118
            K L      R + W ++     V  +     D+    I  +  R    +   P+  G  
Sbjct: 62  GKTLG-----RKIEWIDIDFKGLVPGLISKRFDMAVSGIYITDERKKVVDFTVPYYAGGL 116

Query: 119 VFMVRKDSNITFDRLEDLTSYRIGVVDG---FSYAADFDAATYLEKVASSSNVVNFRRLI 175
           V MV KD N       D+   ++ V  G    SY  +      L +V  +  + N   + 
Sbjct: 117 VVMV-KDGNTAIKTPADINGKKVSVQVGTKSVSYTKEKFPQVQLMEVEKNQEMFNL--VD 173

Query: 176 LGRVD-VIVGDLHVLNYMAKQDGRLKDVRVLPKPVGLIPRYIALPKARKEKAERLQAAFV 234
           +GR D  + G      Y+  + G    ++VLP+ +      +A+ K   E  + +  A  
Sbjct: 174 IGRADAAVTGKPAAYQYVRTRGG----LKVLPEQITTEEYGMAIRKDTPELTKAVNGAIE 229

Query: 235 KLRDNGTIARILDGWLA 251
           KL+ +GT  +I+  W +
Sbjct: 230 KLKADGTYDQIVKKWFS 246