Pairwise Alignments

Query, 539 a.a., Periplasmic oligopeptide-binding protein from Azospirillum sp. SherDot2

Subject, 543 a.a., oligopeptide ABC transporter substrate-binding protein OppA from Erwinia amylovora T8

 Score =  326 bits (836), Expect = 1e-93
 Identities = 186/541 (34%), Positives = 292/541 (53%), Gaps = 26/541 (4%)

Query: 4   LKKKVSAVMVAAG-LALFAGTAAQAATV-----------LNRGNGGEPSTLDPHRTDGRI 51
           +K      ++AAG +A   G  A AA V           L +GNG EP +LDPH+ +G  
Sbjct: 1   MKYITKTTLIAAGVMAALTGNLAWAANVPAGVQLADKQELVKGNGAEPQSLDPHKIEGVT 60

Query: 52  ESNILRDLFEGLVVYGPDGRILPGVAESWQVSEDGKLYSFQLRADARWSNGDAVTAEDFV 111
           ESNI RD+ EGL V   DG+++PGVAESW+  E GK++ F LR  A+WS+G  VTA+DFV
Sbjct: 61  ESNINRDILEGLAVADTDGKVIPGVAESWESKEGGKVWIFHLRDTAKWSDGQPVTAQDFV 120

Query: 112 YSLRRALTPKDGIQPSSNMRV--IKGAAAVIDGTKPADTLGVAAPNPRTVTIALEAATPY 169
           YS +R   PK     +S ++   +     +I G K  D LGV A +P T+ + L  A PY
Sbjct: 121 YSWQRLADPKTASPYASYLQYGHLLNVDDIIAGKKSPDALGVKAIDPHTLQVTLSDAVPY 180

Query: 170 FLDLIAADNSALPVHRGTVESQRERWTDPGKMVSNGAYVLEEWRARQQIGLGRNANFHGR 229
           F  L+    S  PV++  +E   E+WT P   V NGA+   EW   ++I L RN  +   
Sbjct: 181 FYKLL-IHPSMSPVYKPAIEKFGEKWTQPANFVGNGAFKPAEWVVNERIVLERNPQYWDN 239

Query: 230 SGVSIDKVNFFPIDDSAEEVDRFKAGTLHLTYE-VPQDRVKWISLTEPKVFWNRPFLATY 288
           +   ++KV F PI     + +R+++G+  +T+  +P +  + +    P      P+L TY
Sbjct: 240 AHTVLNKVTFLPISSEVTDTNRYRSGSSDMTFNYLPIELYQKLKKEIPAEIHAEPYLCTY 299

Query: 289 YYAFNLTVEPFKSNRDLRRALSLAVNRENIVDKVTRAGETPAYGLVPPIVPNYRRQTADF 348
           YY  N    PF   R +R AL L ++R+ +V+KV   GE PAY   PP     +  T ++
Sbjct: 300 YYEINNQKPPFNDVR-VRTALKLGLDRDILVNKVKAQGEDPAYSFTPPYTDGIKLATPEW 358

Query: 349 IAEPMDNRLREARRLFSTAGFSPMQPLAVEILYNQSENNRVIADAVISMWQDAFGKGIQV 408
            +   D R  EA++L + AG++  +PL  ++LYN S+ ++ +A A  S+W+     G+ V
Sbjct: 359 FSWSQDKRNEEAKKLLAAAGYTADKPLTFDLLYNTSDLHKKLAIAAASIWKK--NLGVNV 416

Query: 409 KPVSVERTDYLKRRARRDFQIVRAAWIGDYADPTVFLNLMLSTALPPRNDPGYRSRKYDD 468
           K  + E   Y+  R + +F + RAAW  DY +P+ F+N++LS +    N   Y+S  +D 
Sbjct: 417 KLQNQEWKTYIDTRHQGNFDVARAAWCADYNEPSSFVNMLLSDS--SNNTSHYKSAAFDK 474

Query: 469 LLAKAAASEDAAQRSSLLGQAEKAMIDDDPVIPIYHFSTKSLVSQQIKGW-----VYNVR 523
            +     ++D  QR++    AEK + D+  ++P+Y++    LV   + G+     + N+R
Sbjct: 475 AVKATLQAKDEGQRAADYSAAEKVLDDESGIVPVYYYKNLRLVKPWVGGYDGKDPLDNIR 534

Query: 524 D 524
           D
Sbjct: 535 D 535