Pairwise Alignments

Query, 539 a.a., Periplasmic oligopeptide-binding protein from Azospirillum sp. SherDot2

Subject, 547 a.a., oligopeptide ABC transporter substrate-binding protein OppA from Dickeya dadantii 3937

 Score =  326 bits (836), Expect = 1e-93
 Identities = 189/528 (35%), Positives = 294/528 (55%), Gaps = 23/528 (4%)

Query: 6   KKVSAVMVAAGLALFAGTAAQAATV-----------LNRGNGGEPSTLDPHRTDGRIESN 54
           KK  AV + A +   A  +A AA V           L R NG E ++LDPH+ +G  ESN
Sbjct: 7   KKRLAVSILAAITASASVSAWAAKVPAGVQLAEKQELVRNNGSEVASLDPHKMEGVPESN 66

Query: 55  ILRDLFEGLVVYGPDGRILPGVAESWQVSEDGKLYSFQLRADARWSNGDAVTAEDFVYSL 114
           I RDL EGL+V  PDG   PGVAESW  +++ K+++F LR DA+WSNGD VTA+DFVYS 
Sbjct: 67  IARDLLEGLLVTSPDGHPAPGVAESWD-NKEFKVWTFHLRKDAKWSNGDPVTAQDFVYSW 125

Query: 115 RRALTPKDGIQPSSNMRV--IKGAAAVIDGTKPADTLGVAAPNPRTVTIALEAATPYFLD 172
           +R   PK     +S ++   I     V+ G K  DTLGV A +  T+ + L    PYF  
Sbjct: 126 QRVSNPKTASPYASYLQFGHIVNIDDVVAGKKSPDTLGVKAIDDHTLEVTLSEPVPYFYK 185

Query: 173 LIAADNSALPVHRGTVESQRERWTDPGKMVSNGAYVLEEWRARQQIGLGRNANFHGRSGV 232
           L+    S  PV++  VE   ++WT P   V NGAY L+EW   ++I L RN N+   +  
Sbjct: 186 LLVHP-STFPVNKKAVEQFGDKWTQPANWVGNGAYKLKEWVVNEKIVLERNPNYWDNANT 244

Query: 233 SIDKVNFFPIDDSAEEVDRFKAGTLHLTY-EVPQDRVKWISLTEPKVFWNRPFLATYYYA 291
            I+KV + PI     +V+R+++G + +TY  +P +  + +    P      P+L TYYY 
Sbjct: 245 IINKVTYLPISSEVTDVNRYRSGEIDMTYNNLPIELFQKLKKEIPSEVKADPYLCTYYYE 304

Query: 292 FNLTVEPFKSNRDLRRALSLAVNRENIVDKVTRAGETPAYGLVPPIVPNY--RRQTADFI 349
            N    PF   R +R+AL L ++++ +V+KV   G+TPA+G  PP +     +    +++
Sbjct: 305 INNQKAPFTDAR-VRQALVLGLDQDILVNKVKGQGDTPAFGFTPPYIDGMDGKLTPPEWV 363

Query: 350 AEPMDNRLREARRLFSTAGFSPMQPLAVEILYNQSENNRVIADAVISMWQDAFGKGIQVK 409
           +   + R  EA++L + AGF+  +PL   +LYN S+ ++ +A A  S+W+     G+  K
Sbjct: 364 SWSREKRNAEAKKLLAEAGFTAEKPLTFNLLYNTSDLHKKLAIAASSIWKSNI--GVDAK 421

Query: 410 PVSVERTDYLKRRARRDFQIVRAAWIGDYADPTVFLNLMLSTALPPRNDPGYRSRKYDDL 469
             + E   +L  R +  F + RA W  DY +PT FLN+M++ +    N   Y+S  +D L
Sbjct: 422 LENQEWKTFLDSRHQGTFDVARAGWCADYNEPTTFLNIMIANS--SSNTSHYKSADFDKL 479

Query: 470 LAKAAASEDAAQRSSLLGQAEKAMIDDDPVIPIYHFSTKSLVSQQIKG 517
           +A+A A++  ++R+ +  QAE  +  D  V+P+Y+++   L+   + G
Sbjct: 480 MAQALAAKTDSERADIYKQAETLLEKDAVVVPVYYYANTRLIKPYVGG 527