Pairwise Alignments

Query, 271 a.a., Inner membrane ABC transporter permease protein YdcV from Azospirillum sp. SherDot2

Subject, 590 a.a., hypothetical protein from Azospirillum sp. SherDot2

 Score =  172 bits (437), Expect = 1e-47
 Identities = 95/241 (39%), Positives = 148/241 (61%), Gaps = 4/241 (1%)

Query: 15  AFCCAMMVFLVGPILAVIPISFSSAGFLSYPIPGLSLQWYDKVLAASGPWLPALRNSLIV 74
           AF   ++V +  P   +IP+SF   G L++P  G +LQWY ++L  S  W+ AL  S++V
Sbjct: 341 AFVWLLLVLISLPAFLMIPLSFGKGG-LAWPPSGFTLQWYQQLLD-SPIWMQALWRSIVV 398

Query: 75  GTGAMALATVLGTLAALGLARNDLPVRSFLLGLLIAPMVVPVVISGVAMYFLFARIGLTA 134
             G   L+  +G  AA  + R+ +  +  +L  +++P+VVP +I  V M+++FA++GL  
Sbjct: 399 AFGTGLLSMAIGVPAAFLMVRSQMRGKGAMLAFILSPIVVPRMIIAVGMFYVFAQMGLVG 458

Query: 135 SYAGLILAHAVLGAPFVVITVTATLRNFDTTLVRAAYSLGASPVRAFLTVTLPLILPGVL 194
           +  GL++ H V+  P+VV+T+ A LRN+DT L  AA SLGA PV A   VT P++  G+L
Sbjct: 459 TILGLVIGHTVVAVPYVVMTMMAVLRNYDTRLDLAAQSLGARPVAALRHVTFPILGAGML 518

Query: 195 SGGLFAFIFSFDEVVVALFIGGPEQRTLPRQMFDGIRDTIDPSILAMST--LLVGVTIVF 252
           S  LFAF  SFDE+ ++LF  G    TLP+Q +D +   + P I A+ST  LL   T+++
Sbjct: 519 SSFLFAFATSFDELTISLFSSGGLSATLPKQFWDEVTLQVSPVIAAVSTGLLLFVATLIY 578

Query: 253 M 253
           +
Sbjct: 579 V 579



 Score = 73.9 bits (180), Expect = 7e-18
 Identities = 75/277 (27%), Positives = 127/277 (45%), Gaps = 37/277 (13%)

Query: 27  PILAVIPISFSSAGFLSYPIPGL-SLQWYDKVLAASGPWLPALRNSLIVG----TGAMAL 81
           P+L   P+      FL +P+  L +L  Y+       P+     +SL +     T  ++L
Sbjct: 21  PVLMGAPLVLLLIAFLVFPVGQLLALSVYNGQGFTLAPYAQLFASSLYITVLWITLKISL 80

Query: 82  AT-VLGTLAA------LGLARNDLPVRSFLLGLLIAPMVVPVVISGVAMYFLFARIGL-- 132
           AT V+  +AA      + +A+   P +S L+  ++       ++   A   +  R G+  
Sbjct: 81  ATTVVAVIAAYPVAYLISIAKG--PAKSRLIFWVLLSFWTSFLVRAFAWVVILGRNGVVN 138

Query: 133 -TASYAGLI----------------LAHAVLGAPFVVITVTATLRNFDTTLVRAAYSLGA 175
            T    G+I                + HA+L  P  V+T+ A + N D TL RAA +LGA
Sbjct: 139 STLMSLGIIDTPADLLYGFGAVLIGMVHAML--PLAVMTMLAVMENIDRTLPRAAGTLGA 196

Query: 176 SPVRAFLTVTLPLILPGVLSGGLFAFIFSFDEVVVALFIGGPEQRTLPRQMFDGIRDTID 235
            P  AF TV  PL LPGV +  +  F+ +    +V   +GG ++  + + + D ++ T++
Sbjct: 197 RPGTAFWTVYFPLSLPGVAASAIMVFVSAIGFFIVPALLGGRKETMITQLIIDQVQQTLN 256

Query: 236 PSIL-AMSTLLVGVTIVFMGLLARLGRGTGSKPGSNA 271
             +  A+S LL+ V +V   L  R+  G  S  G +A
Sbjct: 257 WGLAGAISVLLLTVVLVVFLLYDRV-FGFASLTGESA 292