Pairwise Alignments

Query, 286 a.a., IS3 family transposase ISMdi5 from Azospirillum sp. SherDot2

Subject, 272 a.a., IS3 family IS600 transposase from Escherichia coli ECOR38

 Score =  249 bits (637), Expect = 4e-71
 Identities = 127/261 (48%), Positives = 168/261 (64%), Gaps = 1/261 (0%)

Query: 18  MCSVLGVSSSGYYAWRGRPESQRAAANRQLLVEVRRVHGRHHGRYGSPRVHAALRAEGVA 77
           MC V GVS SGYY W     S R  ++ +L +E++  H R    YG+ R+   L   G+ 
Sbjct: 1   MCQVFGVSRSGYYNWVQHEPSDRKQSDERLKLEIKVAHIRTRETYGTRRLQTELAENGII 60

Query: 78  ASRGRVARLMRRHGIRGAASRRFRPVTTNSRHGLPVAPDLLGQAFLVAEPNRVWLADITW 137
             R R+ARL +   +R    R+FR  TTN  H LPVAP+LL Q F    PN+VW+AD+T+
Sbjct: 61  VGRDRLARLRKELRLRCKQKRKFR-ATTNPNHNLPVAPNLLNQTFTPTAPNQVWVADLTY 119

Query: 138 LPTAEGWLYLAAVLDLATRKIVGWAMRDHMRAELATSALVMAIQRQRPPVGLIQHSDRGS 197
           + T EGWLYLA + D+ T +IVG+AM + M  EL   AL MA++ QRPP GLI HSDRGS
Sbjct: 120 VATQEGWLYLAGIKDVYTCEIVGYAMGERMTKELTGKALFMALRSQRPPAGLIHHSDRGS 179

Query: 198 QYASRNYRDLLQAAGMRQSMSRKGCCYNNAPMESFFHTLKVELVHRTRFETRDQARREVF 257
           QY + +YR + +  G++ SMSRKG CY+NAPMESF+ TLK E +   RF  RD+A   + 
Sbjct: 180 QYCAYDYRVIQEQFGLKTSMSRKGNCYDNAPMESFWGTLKNESLSHYRFNNRDEAISVIR 239

Query: 258 AYIETYYDRQRAHSAIGYITP 278
            YIE +Y+RQR HS +G I+P
Sbjct: 240 EYIEIFYNRQRRHSRLGNISP 260