Pairwise Alignments

Query, 288 a.a., HTH-type transcriptional activator RhaS from Azospirillum sp. SherDot2

Subject, 278 a.a., Transcriptional regulator, AraC family from Pseudomonas sp. S08-1

 Score =  283 bits (724), Expect = 3e-81
 Identities = 147/279 (52%), Positives = 186/279 (66%), Gaps = 9/279 (3%)

Query: 14  DWVAVRRDAETGIETIRAHFRGHAYDLHDHDELLVGVTEQGVQAFRCRRRLHTSVPGRVI 73
           +W+ + +DA+TGIE+IRAHF GHAYD H HD  LVGVTEQGVQ F CRR  H S PG+VI
Sbjct: 5   NWIDLAQDADTGIESIRAHFEGHAYDPHWHDSYLVGVTEQGVQQFNCRREKHLSTPGKVI 64

Query: 74  LIEPGEAHDGHSPGEDGFTYAMLYLPVPLLTARSEALRSLTPRGTGLPLGFRDTLADDPG 133
           L+EPGE HDGH+P  +GFTY+MLY+    L     AL    P  +     F + L +D  
Sbjct: 65  LLEPGEIHDGHAPTAEGFTYSMLYIDPQWLERELHALFEHAPADS--TPSFANILNNDAP 122

Query: 134 LAATIRSAFLALHQREGRLARDLSLDRLAARLVGHLAPPEERRPQRPDRAALLV----RD 189
           +A  I  AF  LH+ + R+ R  ++D L   +   L   + R+ + PD    LV    RD
Sbjct: 123 MAGAIFRAFHTLHEGDLRIVRQTTIDDLLGSMTSRL---QWRKRENPDPRLPLVAQRARD 179

Query: 190 LLHARMAEDVGLDALSAAAGVDRFRLNRGFRAAFGLSPHAYLVRLRLRTARRRLADGEAP 249
            LHA    D+GLD  +AA GVDRFRL+R F++AFG++PHAYL++LRL  AR+RLA G+ P
Sbjct: 180 YLHANFDRDIGLDDTAAACGVDRFRLSRAFKSAFGIAPHAYLIQLRLAKARQRLARGDTP 239

Query: 250 ALVAAEVGFADQSHLGRWFRRAYGLTPAAYRDLCTNVPD 288
           A VA+ +GFADQSHLGRWFRRAY LTPA YR  CT +PD
Sbjct: 240 ADVASALGFADQSHLGRWFRRAYRLTPADYRRRCTKLPD 278