Pairwise Alignments

Query, 523 a.a., Transcription termination/antitermination protein NusA from Azospirillum sp. SherDot2

Subject, 501 a.a., transcription termination factor NusA from Erwinia tracheiphila SCR3

 Score =  412 bits (1060), Expect = e-119
 Identities = 223/502 (44%), Positives = 320/502 (63%), Gaps = 17/502 (3%)

Query: 2   ELLQVADAVAREKNIDRDEVLEAMEQAIQKAGRSKYGHEHDIRARIDRKTGDIHLTRHLE 61
           E+L V +AV+ EK++ R+++ EA+E A+  A + KY  E D+R  IDRK+GD    R   
Sbjct: 4   EILAVVEAVSNEKSLPREKIFEALESALATATKKKYEQEIDVRVSIDRKSGDFDTFRRWL 63

Query: 62  VVETVENEATQVTLPYAQKRKAGAKLGDFLVDPLPPIDFGRIAAQTAKQVIVQKVRDAER 121
           VVE V     ++TL  A+        GDF+ D +  + F RI  QTAKQVIVQKVR+AER
Sbjct: 64  VVEEVTMPTREITLEAARFDDGSLNAGDFVEDQIESVTFDRITTQTAKQVIVQKVREAER 123

Query: 122 KRQFNEYKDRNGEIVNGLVKRVEYGNVTVDLG-------RAEAILRRDELLPREHFKNGD 174
               ++++++ GEI+ G+VK+V   N+++++         AEA++ R+++LPRE+F+ GD
Sbjct: 124 AMVVDQFREQEGEIITGVVKKVNRDNISLEVRPNDGSSTNAEAVIIREDMLPRENFRPGD 183

Query: 175 RVRAYIFDVREEPRGPQIFLSRTHPMFMAKLFAQEVPEIYDGIIEIKAVARDPGSRAKIA 234
           R+R  ++ VR E RG Q+F+SR+ P  + +LF  EVPEI + ++EIK  ARDPGSRAKIA
Sbjct: 184 RIRGVLYAVRPEARGAQLFVSRSKPEMLIELFRIEVPEIAEEVLEIKTAARDPGSRAKIA 243

Query: 235 VLSHDSSIDPVGACVGMRGSRVQAVVGELQGEKIDIIPWNGEAPTFVVNALAPAEVAKVV 294
           V ++D  IDPVGACVGMRG+RVQAV  EL GE+IDI+ W+     FV+NA+APA+VA +V
Sbjct: 244 VKTNDKRIDPVGACVGMRGARVQAVSSELGGERIDIVLWDDNPAQFVINAMAPADVASIV 303

Query: 295 LDDDNHRIEVVVPDDQLSLAIGRRGQNVRLASMLTGWDIDILTEQEESERRSEEIHNRSA 354
           +D+DNH +++ V    L+ AIGR GQNVRLAS L+GW+++++T  +   +   E H    
Sbjct: 304 VDEDNHTMDIAVEAGNLAQAIGRNGQNVRLASQLSGWELNVMTVDDLQAKHQAEAHAAID 363

Query: 355 LFMQALDVDDVIAHLLVAEGFTSVEEIAYVETEELAEIEGFDESVADELKQRAL-AFLEV 413
           +F + LD+D+  A +LV EGF+S+EE+AYV   EL EI+G DE   + L+ RA  A   +
Sbjct: 364 VFTRHLDIDEEFATILVEEGFSSLEELAYVPIHELLEIDGLDEETVEVLRDRAKNALTTL 423

Query: 414 RDEQANERRLELGVEDIIAELTGFSATQLVKLGENGVKTLDDLADLAGDELVEILGKDGA 473
             E+A         ED++  L G       KL   GV TL+DLA+   D+L +I G  G 
Sbjct: 424 ALEKAESHGSNTPAEDLL-NLEGLDREMAFKLAAAGVCTLEDLAEQGVDDLTDIEGLSG- 481

Query: 474 KDAPSEEEANAIIMAAR-AHWF 494
                 E+A  +IMAAR   WF
Sbjct: 482 ------EQAGELIMAARNICWF 497