Pairwise Alignments

Query, 443 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Azospirillum sp. SherDot2

Subject, 452 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Pseudomonas putida KT2440

 Score =  163 bits (413), Expect = 9e-45
 Identities = 145/438 (33%), Positives = 208/438 (47%), Gaps = 36/438 (8%)

Query: 27  QEMEVSIADVGARGDGIAFAEGLRLFVPYTVTGDRVRVRAADSDGKGEGVRAELLEVLEP 86
           ++  + I  +   G GIAF +G   FV   + G+ V  R  ++ GK   V A L  +L+ 
Sbjct: 27  KKQRLDIERLAGDGRGIAFLDGRTWFVSGALAGEAVEARVLNARGKV--VEARLERLLQA 84

Query: 87  GTGRQTPPCRHFGRCGGCTLQQMDDPTYAAWTVGMVRGALERVGLGDVP---MEPLARTP 143
              R+  PCR++ RCGGC LQ +      A     +   L+RV  G  P     PL+   
Sbjct: 85  APERREAPCRYYDRCGGCNLQHLPHEAQLALKQRTLAEQLQRVA-GVQPEAWAAPLSGPE 143

Query: 144 AGARRRARFAAL--KRGKRVWFGFNERQSHRLVDLEECPVLSPRLFALVEPLRTLLNGLL 201
            G RRRAR A     + +++  GF    S  ++ +++C VL   L +++  L T+L  L 
Sbjct: 144 FGYRRRARVAVRWDVKARQLEVGFRAEASQDIIAIDDCAVLVQPLQSILRHLPTVLRSLS 203

Query: 202 PDGGDADVVLTDLEGGVDLLLV---GPRSLDRAAREVLFGFEPERIARIAWQPTDRAAAE 258
                  V L    G  + +LV    P   +  AR  L  F  +  A++  Q       E
Sbjct: 204 KPQALGHVEL--FSGTAEAVLVRHVAPLPAEDQAR--LQAFCEQANAQLWLQ----GEGE 255

Query: 259 PVANRRPAFIRFAGVPIQPP----PGAFLQASAEGEAALVAAVREGVGQAG--RIADLFA 312
           P      A + FA  P Q      PG F+Q +A+   A++      +      R+ DLF 
Sbjct: 256 PAPVDPAAQLGFALAPWQLELAWRPGDFVQVNAQVNTAMIEQALAWLAPQADERVLDLFC 315

Query: 313 GVGTFSIPLAQQAA-VHAVEG-----DEAAVAALGRSVQGLRLTAERRDLFENPLSAKD- 365
           G+G F++PLA+QA  V AVEG     D AA  A   +V   R    + DL + PL+    
Sbjct: 316 GLGNFALPLARQAREVVAVEGVQAMVDRAAANARNNNVHNARFF--QADLSQ-PLAGTGW 372

Query: 366 -LNRYDAVVFDPPRAGAVAQAAALAGSKVPRVVGVSCNPASFARDARVLVDGGYRLVKLW 424
               + AV+ DPPR GA      +A  K  R+V VSCNPA+ ARDA+VLV  GYRL +  
Sbjct: 373 AAEGFSAVLLDPPRDGAFEVVQGIARLKARRLVYVSCNPATLARDAQVLVGQGYRLKRAG 432

Query: 425 PVDQFLWSAHVELVGLFE 442
            +D F  +AHVE + LFE
Sbjct: 433 ILDMFPQTAHVEAMALFE 450