Pairwise Alignments

Query, 443 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Azospirillum sp. SherDot2

Subject, 433 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Escherichia coli ECOR27

 Score =  168 bits (426), Expect = 3e-46
 Identities = 136/428 (31%), Positives = 203/428 (47%), Gaps = 22/428 (5%)

Query: 27  QEMEVSIADVGARGDGIAFAEGLRLFVPYTVTGDRVRVRAADSDGKGEGVRAELLEVLEP 86
           Q + VS+ D+ + G G+A   G  LF+P  +  +   V  A ++ K +  RA+++  L  
Sbjct: 15  QIITVSVNDLDSFGQGVARHNGKTLFIPGLLPQENAEV--AVTEDKKQYARAKVVRRLSD 72

Query: 87  GTGRQTPPCRHFGRCGGCTLQQMDDPTYAAWTVGMVRGALERVGLGDVPMEPLARTPAGA 146
              R+TP C HFG CGGC  Q                 AL R+   DV  E +A  P G 
Sbjct: 73  SPERETPRCPHFGVCGGCQQQHASVDLQQR----SKSAALARLMKHDVS-EVIADVPWGY 127

Query: 147 RRRARFAA--LKRGKRVWFGFNERQSHRLVDLEECPVLSPRLFALVEPLRTLLNGLLPDG 204
           RRRAR +   L + +++  GF +  S  +VD+++CP+L P+L AL+  +R  L  L    
Sbjct: 128 RRRARLSLNYLPKTQQLQMGFRKAGSSDIVDVKQCPILVPQLEALLPKVRACLGSLQVMR 187

Query: 205 GDADVVLTDLEGGVDLLLVGPRSLDRAAREVLFGFEPERIARIAWQPTDRAAAEPVANRR 264
               V L     G  ++L     L  A RE L  F       +   P D    E V+   
Sbjct: 188 HLGHVELVQATSGTLMILRHTAPLSSADREKLERFSHSEGLDLYLAP-DSEILETVSGEM 246

Query: 265 PAFIRFAGVPIQPPPGAFLQASAEGEAALVAAVRE--GVGQAGRIADLFAGVGTFSIPLA 322
           P +    G+ +   P  F+Q +A     +VA   E   V    R+ DLF G+G F++PLA
Sbjct: 247 PWYDS-NGLRLTFSPRDFIQVNAGVNQKMVARALEWLDVQPEDRVLDLFCGMGNFTLPLA 305

Query: 323 QQAAVHAVEGDEAAVAALGRSVQGLRLTAERRDLFENPLSAKDL-------NRYDAVVFD 375
           +QAA  +V G E   A + +  Q  RL   +   F +    +D+       N +D V+ D
Sbjct: 306 KQAA--SVVGVEGVPALVEKGQQNARLNGLQNVTFYHENLEEDVTKQPWAKNGFDKVLLD 363

Query: 376 PPRAGAVAQAAALAGSKVPRVVGVSCNPASFARDARVLVDGGYRLVKLWPVDQFLWSAHV 435
           P RAGA      +   +  R+V VSCNPA+ ARD+  L+  GY + +L  +D F  + H+
Sbjct: 364 PARAGAAGVMQQIIKLEPIRIVYVSCNPATLARDSEALLKAGYTIARLAMLDMFPHTGHL 423

Query: 436 ELVGLFER 443
           E + LF R
Sbjct: 424 ESMVLFSR 431