Pairwise Alignments

Query, 443 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Azospirillum sp. SherDot2

Subject, 456 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola 67-19

 Score =  157 bits (398), Expect = 5e-43
 Identities = 131/440 (29%), Positives = 195/440 (44%), Gaps = 32/440 (7%)

Query: 27  QEMEVSIADVGARGDGIAFAEGLRLFVPYTVTGDRVRVRAADSDGKGEGVRAELLEVLEP 86
           Q + V+  D+   G G+A  +G  LF+P  + G++  V+  +   K +   A L  +L  
Sbjct: 15  QTLTVTANDLDPFGQGVARHQGKTLFIPGVLPGEQAEVQLTEE--KRQFAHARLRRLLTT 72

Query: 87  GTGRQTPPCRHFGRCGGCTLQQMDDPTYAAWTVGMVRGALERVGLGDVPMEP--LARTPA 144
              R TP C HF  CGGC  Q    P         +   + R   G VP EP  +A +  
Sbjct: 73  SEERVTPRCPHFSVCGGCQQQHASQPLQQRSKAAALTHLMTRE-TGAVPPEPEVIAESAY 131

Query: 145 GARRRARFAALKRGK--------------RVWFGFNERQSHRLVDLEECPVLSPRLFALV 190
             RRRAR A   + K              R+  G+ +  SH LVD+  CP+L P L AL+
Sbjct: 132 AYRRRARLALYYQAKTQAKTQSKTQAKTHRLQMGYRQAGSHDLVDIAACPILCPELEALL 191

Query: 191 EPLRTLLNGLLPDGGDADVVLTDLEGGVDLLLVGPRSLDRAAREVLFGFEPERIARIAWQ 250
            PLR  L  L        V L   E G  ++L     L  A R+ L  F       +   
Sbjct: 192 APLRDCLGQLQAVRRLGHVELVLAEQGPLVVLRHLDPLRDADRQALTAFAVLHGTALFSA 251

Query: 251 PTDRAAAEPVANRRPAFIRFAGVPIQPPPGAFLQASAEGEAALVAAVREGVGQA--GRIA 308
           P +  A E +    P++ R AG+ +   P  F+Q +      +V      +      R+ 
Sbjct: 252 P-EAGALECLHGDMPSY-RIAGLSLAFSPRDFIQVNDGINQRMVEQALTWLDPQPQDRVL 309

Query: 309 DLFAGVGTFSIPLAQQAAVHAVEGDEAAVAALGRSVQGLRLTAERRDLFENPLSAKDLNR 368
           DLF G+G F++PLA +A   +V G E   A + +  +  R     +  F +     D+ R
Sbjct: 310 DLFCGMGNFTLPLAARAG--SVVGVEGVAALVDKGRENARRNGLTQVTFYHHDLEADVTR 367

Query: 369 -------YDAVVFDPPRAGAVAQAAALAGSKVPRVVGVSCNPASFARDARVLVDGGYRLV 421
                  +D ++ DP RAGA      +      RVV +SCNP + ARD++VL+  GYRL 
Sbjct: 368 QPWAAMGFDKILLDPARAGASGVMPQIVKLAPRRVVYISCNPTTLARDSKVLMAAGYRLA 427

Query: 422 KLWPVDQFLWSAHVELVGLF 441
           +L  +D F  + H+E + LF
Sbjct: 428 RLAMLDMFPHTGHLESMALF 447