Pairwise Alignments

Query, 536 a.a., putative D,D-dipeptide-binding periplasmic protein DdpA from Azospirillum sp. SherDot2

Subject, 536 a.a., ABC transporter substrate-binding protein from Pseudomonas fluorescens SBW25

 Score =  344 bits (883), Expect = 4e-99
 Identities = 199/519 (38%), Positives = 285/519 (54%), Gaps = 8/519 (1%)

Query: 16  AAVLALTGFAAPALADTPKDALVMAWQFDDIVSLDPGEIFELSGAEYSAQVYDRLIHFDV 75
           AA LAL G    A A TP D L++     ++ S+DP     L  +  +A +YD LI  D 
Sbjct: 14  AAALAL-GPMTLAQAKTPADQLIVGMSMVNLFSIDPANAPGLDASGVNANLYDTLIKRDQ 72

Query: 76  NDVSKIEGEAAESWTVSPDGKTFTFKIRDGIAFHSGNPMTAEDVAWSFSRAVKMNKGPAF 135
            +  K   + AE W +S DGK  TF +R  + FHSGNP+TAEDVAWS  R +K+N G A 
Sbjct: 73  GNPEKHLPQLAERWDISEDGKQVTFHLRQDVKFHSGNPLTAEDVAWSLYRVMKLNFGLAT 132

Query: 136 ILTQFGLTPENVDQMVRATDPKTLVFTTDKVYAPTFVLYCLT-ADVASIVDSKLVKGKEK 194
               +G + EN+  ++RATD  TLV    +   P  ++  L  +  A +VD K     EK
Sbjct: 133 TWKAYGYSVENIQSLIRATDAHTLVIDLPQTMDPLLLVDSLAISPSAVVVDRKTALAHEK 192

Query: 195 DGDFGAGWLKTNSAGSGPFILKQWKASELLTFDANPKYWRGAPKLKRVLIRHIPEPATQR 254
           +GD GAGWL TN AGSGPF+L +W A++ L       YW GA KLKRV++RH+ E  + R
Sbjct: 193 NGDLGAGWLVTNEAGSGPFVLTKWNANDSLLLTRFDGYWGGAAKLKRVVVRHMTESQSLR 252

Query: 255 LLLEKGDVDVARNLKPEQFEPLKSSDAIRLVQAPKGTLWYLSLNQKNATLAKPEVREAFK 314
           L+LE+GD+D+A  +       +  SD I++   P+GT++Y++++ K    AK +VREA +
Sbjct: 253 LMLERGDLDLAYGMAAPDIRAIDGSDKIQVQSLPRGTMYYVAMSMKQPEFAKAQVREAVR 312

Query: 315 YLVDYDGMAGSIMNGIGAVHQAFLPKGFLGAVNDNPYKYDPAKAKELLAKAGYPEGFTVS 374
            L+DY G+   +M   G ++Q  +  G    + D  Y  D  KAK+LLA+AGYPEGFT +
Sbjct: 313 NLIDYKGLDEQVMPYYGTLNQQPMQLGLAARLPDPGYHMDVPKAKKLLAEAGYPEGFTTT 372

Query: 375 MDVRNTNPTQDMAQAIQASAAKAGIKIEIIPGDGKQVLTKYRARNHELMIQQWGADYQDP 434
           +   +  P  D+A  +QA+ A+ GIK  I+ G G QV    RARN E+++ +    Y  P
Sbjct: 373 IRTLSEPPFIDIAARLQATLAEGGIKASIVTGTGNQVYGAMRARNFEIIVARGAERYPHP 432

Query: 435 NSNADTFASNPDNSDNAKSKPL-AWRNAWDIPELTRKTAAAIEERDGAKRAQMYEELQRS 493
             +  TFA NP+NSD+A       WR ++  P L      A   RD A+R  +Y + Q  
Sbjct: 433 YFSLRTFAYNPNNSDDAGLPNFQGWRASFFSPPLNSLIDKAGVTRDAAQRISLYHQAQ-- 490

Query: 494 VLAD---SPFVIMFQQTEMVAERKSVSGLVWGPSFDTNY 529
            L D    P +++ Q T+ V     V G     +  T Y
Sbjct: 491 TLYDQQVGPILMISQMTDTVVSAADVKGFSGDDAEATRY 529