Pairwise Alignments

Query, 446 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 507 a.a., group II intron reverse transcriptase/maturase from Escherichia coli ECOR38

 Score = 63.9 bits (154), Expect = 1e-14
 Identities = 81/372 (21%), Positives = 141/372 (37%), Gaps = 66/372 (17%)

Query: 12  RIFRKTFNPKKLISLFNDKISSTKA--VGRDGVRVEKFAEKLNDEVALIVRKASDGKYKF 69
           R+ R    P+ L       +SS  A   G DGV       +L  E+ ++  +   G Y+ 
Sbjct: 24  RLLRLITQPEWLAEAARITLSSKGAHTPGVDGVNKTMLQARLAVELQILRDELLSGHYQP 83

Query: 70  TKYKLKLVSKGVGKIPRVLSIPTVRDRLALRAMCEFLSTIFPDAV---------TKKPHS 120
              +   + K  GK+ R L IP +RDR+  RAM   +  I+              +  H 
Sbjct: 84  LPARRVYIPKSNGKL-RPLGIPALRDRIVQRAMLMAMEPIWESDFHTLSYGFRPERSVHH 142

Query: 121 YIKAIRESLNSLDDSAV--FLRIDVKDYYPSIDRTVLESIIRKRIRKRQARDIIMAAVST 178
            I+ ++  L    ++     +  D+  Y+ ++   +L   +R+RI   +   ++   +  
Sbjct: 143 AIRTVKLQLTDCGETRGRWVIEGDLSSYFDTVHHRLLMKAVRRRISDARFMTLLWKTIKA 202

Query: 179 TTTG-----GDDSGIPQGLSISNILAGIYLRDFDIYAEGR-------------------- 213
                        G+PQG  IS +L+ I L +FD Y   R                    
Sbjct: 203 GHIDVGLFRAASEGVPQGGVISPLLSNIMLNEFDQYLHERYLSGKARKDRWYWNNSIQRG 262

Query: 214 ----------WK----YFRYVDDILIICKDTNEADKAYQEISKKLL-AEKKLQCHPISEN 258
                     WK    Y RY DD ++I K T    +A +E  + +L    KL+ +     
Sbjct: 263 RSTAVRENWQWKPAVAYCRYADDFVLIVKGTKAQAEAIREECRGVLEGSLKLRLN----M 318

Query: 259 GKSCIKKVTDGVDYLGYTVSK--------NMISVREASYKNIFPKILSVLTYHRHHKDEA 310
            K+ I  V DG  +LG+ + +         ++S         F   L+ L    + + + 
Sbjct: 319 DKTKITHVNDGFIFLGHRIIRKRSRYGEMRVVSTIPQEKARNFAASLTALLSGNYSESKV 378

Query: 311 KLIWRLNLKISG 322
            +  +LN K+ G
Sbjct: 379 DMAEQLNRKLKG 390