Pairwise Alignments

Query, 446 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 603 a.a., reverse transcriptase/maturase family protein from Bacteroides stercoris CC31F

 Score = 51.2 bits (121), Expect = 9e-11
 Identities = 53/195 (27%), Positives = 83/195 (42%), Gaps = 15/195 (7%)

Query: 38  GRDGVRVEKFAEKLNDEVALIVRKASDGKYKFTKYKLKLVSKGVGKIPRVLSIPTVRDRL 97
           G DG  +++ +    + +  ++    D  Y+    +   + K  GK  R L IP+  D+L
Sbjct: 52  GTDGKTIDEMSL---ERIERLIVSLKDESYQPHPARRVYIPKKNGK-KRPLGIPSFEDKL 107

Query: 98  ALRAMCEFLSTIFPDAVTKKPHSYI--KAIRESLNSLDDSAV----FLRIDVKDYYPSID 151
               +   L  I+        H +   ++   +L  +  S      F+  D+K ++ +ID
Sbjct: 108 VQEVVRLLLEAIYEGHFEGTSHGFRPHRSCHTALGMIQKSFAGAKWFIEGDIKGFFDNID 167

Query: 152 RTVLESIIRKRIRK----RQARDIIMAA-VSTTTTGGDDSGIPQGLSISNILAGIYLRDF 206
             VL SI+R+RI      R  R  + A  V         SG PQG  IS +LA IYL  F
Sbjct: 168 HNVLISILRERISDERFLRLIRKFLNAGYVEDWKYNKTYSGTPQGGIISPMLANIYLDKF 227

Query: 207 DIYAEGRWKYFRYVD 221
           D Y +     FR  D
Sbjct: 228 DKYIKEYAAKFRKGD 242



 Score = 28.5 bits (62), Expect = 6e-04
 Identities = 18/66 (27%), Positives = 32/66 (48%), Gaps = 5/66 (7%)

Query: 213 RWKYFRYVDDILI-ICKDTNEADKAYQEISKKLLAEKKLQCHPISENGKSCIKKVTDGVD 271
           R +Y RY DD LI +    +E +    +I++ +  + KL+      + K+ I    D   
Sbjct: 302 RMQYVRYADDFLISVIGSKSECETIKADITQFMREQLKLEL----SDEKTLITHAQDKAK 357

Query: 272 YLGYTV 277
           +LGY +
Sbjct: 358 FLGYEI 363