Pairwise Alignments

Query, 346 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 403 a.a., Nitrate ABC transporter, nitrate-binding protein from Pseudomonas fluorescens GW456-L13

 Score = 52.4 bits (124), Expect = 2e-11
 Identities = 69/292 (23%), Positives = 129/292 (44%), Gaps = 26/292 (8%)

Query: 33  AADPVKLEIGYIPILAASPLFIVDGQGWAKDAGIALKLTRFESGPHAIQAMAAGQID--- 89
           A +  ++ +G++ +   + + +   QG+A+  G+ L L R  S  +    + +G++D   
Sbjct: 17  APEKTEINLGFMALSDCASVVVAATQGFAQPHGLTLNLKRQSSWANLRDKLVSGELDAAH 76

Query: 90  ----LLYA---GVAPVLVARTKGAEISVIANSAVEEMVVAARGPFAKAVGTTPTAESFKK 142
               L+YA   G+    VA T  A +  +  +   + +  +RG   +A+G T + E+ ++
Sbjct: 77  SLYGLVYAVHLGIGG--VAATDMAVLMGLNQNG--QSINLSRG--LQALGVT-SPEALER 129

Query: 143 FVADTGRKPKIGTQPPGSVPDTVLKHWLFKVVKVDPADVELVPMGIEKTQQALLAGALDA 202
            V  T  K       P       L +WL         DV+ V +   +    L AG +D 
Sbjct: 130 HVHQTRSKFTFAQTFPTGTHAMWLYYWLASQGIHPLLDVDSVVVPPPQMVAHLRAGRIDG 189

Query: 203 ATIREPTVTVTQQMDPNVVLLATGAQMFPDQPGTVVSARAEVLKKNPDAIKALVKAHIRA 262
             + EP      Q D     LAT   ++PD P  V+      +++ P+  +ALV A + A
Sbjct: 190 FCVGEPWSASAVQQDLGFT-LATTQTIWPDHPEKVLGCTRAFVEQYPNTARALVMAILEA 248

Query: 263 ---VDLIVKDPAGSAKIVN--NYLGKGL--MEPATLEAAFKGPGSKFVADPH 307
              ++   ++   +A++++   YL   L  +EP  L     G G+++  DPH
Sbjct: 249 SRFIEESSENRRSTAQLLSAAQYLDAPLECIEPRLLGDYVDGLGNRW-QDPH 299