Pairwise Alignments

Query, 298 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 342 a.a., autoinducer 2 ABC transporter permease LsrC from Escherichia coli ECRC98

 Score = 60.5 bits (145), Expect = 5e-14
 Identities = 68/253 (26%), Positives = 115/253 (45%), Gaps = 35/253 (13%)

Query: 6   LFGAIEIGLVYALVAIGVYLSFRILDFPDLTVDGSFPLGAAVCAVLLIAGVNPWLASLAA 65
           ++ + +I ++ A+ A  V L+  I    D++V     + A +  +LL AG +  +A +A 
Sbjct: 40  VYSSAQILILLAMGATLVMLTRNI----DVSVGSITGMCAVLLGMLLNAGYSLPVACVAT 95

Query: 66  ALAGAAAGLVTATLNVRFKILHLLASILTMIALFSVNLRVMGRPNVALLMQDTVLTPFYG 125
            L G  AG     L    KI  ++A++ T+     + L   G   +              
Sbjct: 96  LLLGLLAGFFNGVLVAWLKIPAIVATLGTLGLYRGIMLLWTGGKWIE------------- 142

Query: 126 LGIPDHIVR---PLVVGV---------IVAAVVLLLARFLGSEFGLAMRATGVNARMARA 173
            G+P  + +   PL++GV         +VA +  LLA+   + FG +  ATG N + AR 
Sbjct: 143 -GLPAELKQLSAPLLLGVSAIGWLTIILVAFMAWLLAK---TAFGRSFYATGDNLQGARQ 198

Query: 174 QGVDTDAHVYAGIALSNALTGLAGALFAQTNGFADVTTGIGTIVVGLAAVIVGETVLPAR 233
            GV T+A      +L+  +  LAG +FA   GF    TG G  +  +AA ++G   L   
Sbjct: 199 LGVRTEAIRIVAFSLNGCMAALAGIVFASQIGFIPNQTGTGLEMKAIAACVLGGISLLGG 258

Query: 234 ALALALVGCVAGS 246
             + A++G V G+
Sbjct: 259 --SGAIIGAVLGA 269