Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1150 a.a., transcription-repair coupling factor from Pseudomonas syringae pv. syringae B728a ΔmexB

 Score =  754 bits (1946), Expect = 0.0
 Identities = 456/1167 (39%), Positives = 654/1167 (56%), Gaps = 46/1167 (3%)

Query: 11   AGRLLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRCALLAEALAFFAPKLEVLTFP 70
            AG+   G  P    +  +AE A  A  + LL  A D      L + L FFAP L VL FP
Sbjct: 13   AGKQHWGNLPGATLSLAIAEAASAAKRFTLLLTA-DSQSAERLEQELKFFAPTLPVLHFP 71

Query: 71   AWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAVVQKVPPRS 130
             W+ LPYD  SP+  I+++RI +L RL            L   +++  +   + ++ P  
Sbjct: 72   DWETLPYDLFSPHQDIISQRIASLYRL----------PELEHGVLVVPITTALHRLAPTK 121

Query: 131  AFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGTEEPLR 190
                +     +  ++D+E ++  L  +GY    TV E GEF VRG ++DLFP G++ P R
Sbjct: 122  FLLGSSLVLDVGQKLDVEAMRTRLEASGYRYVDTVYEHGEFTVRGALIDLFPMGSKLPFR 181

Query: 191  LDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRELFGAVTDD 250
            +DLF DE+E +R FDP TQR+ DK +SV L P  E  L    + RF++ +RE F      
Sbjct: 182  IDLFDDEIETLRTFDPDTQRSIDKVESVRLLPAREFPLQKEEVTRFKARFRERFDVDFRR 241

Query: 251  DPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRG--IVSLDHQANEARDARIAQVVD 308
             P+++ +S+G +  G+E+++PLF E   T+ DYLP+   + SL      A +        
Sbjct: 242  SPIFQDLSSGITPAGIEYYIPLFFEETSTLFDYLPQDTQVFSLPGIEQAAENFW------ 295

Query: 309  FHASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFSTPPGIKGTV 368
                 D     E+R   P    +P A +FL          E   A+L+ +      +  V
Sbjct: 296  ----NDVRNRYEERRVDPARPLLPPAELFLP--------VEDCFARLKNWPRVVASQQDV 343

Query: 369  DAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRAD----GRRVLIAGYSAGSRDRLSNVL 424
            DAG   G +    ++ PD+++       + AL         RVL    SAG R+ L  +L
Sbjct: 344  DAGA--GRERFPAQSLPDLSIEAKATQPLAALSTFLDDFPGRVLFTAESAGRREVLLELL 401

Query: 425  ADHGIPGLEPAESMEDVRRFDRGIIGTIVLGMEHGFTSADLAVITEQDILGDRLVRPAKK 484
                +        ++ V   DR  I    L          LA+I E  + G R+++  ++
Sbjct: 402  ERLKLRPKTVDSWLDFVDGKDRLAITIAPLDEGLLLEQPALALIAESPLFGQRVMQRRRR 461

Query: 485  KRKAAN-----FIAEHSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRLIYEGGDK 539
            +++         I   + L EG  VVH+DHG+GRY GL TL+V     + L L Y    K
Sbjct: 462  EKRTDGGNNDAVIKNLTELREGAPVVHIDHGVGRYLGLATLEVENQVAEFLMLAYAEDAK 521

Query: 540  LYVPVENIEVLSRY-GSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLK 598
            LYVPV N+ +++RY GS+D    L +LG   WQ  K +  ++++D+A  LL I A R  +
Sbjct: 522  LYVPVANLHLIARYTGSDDETAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIYARRAAR 581

Query: 599  KADPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVA 658
            +      P+  Y  F+A FP+ ET DQ   I+ +  D+ + +PMDRLVCGDVGFGKTEVA
Sbjct: 582  EGYAFADPKADYATFSAGFPFEETPDQQTTIDAVRADMLAPKPMDRLVCGDVGFGKTEVA 641

Query: 659  LRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQTLVKKE 718
            +RAAF+    G+QVA++VPTTLLA+QH+ +F  RF   PV V  +SR  +A+E +    +
Sbjct: 642  MRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEVSAAVAD 701

Query: 719  LAEGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATP 778
            LAEG  DIV+GTH LL   +  K LG+VI+DEE  FGV+QKE+LK LR+++ +LTLTATP
Sbjct: 702  LAEGKIDIVIGTHKLLQDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDILTLTATP 761

Query: 779  IPRTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQSFYVCPR 838
            IPRTL MA+SG+R+LS+IATPP  RL+VRTFV+  +   I+EA+LRE  RGGQ +Y+   
Sbjct: 762  IPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKPTIKEALLRELLRGGQVYYLHND 821

Query: 839  VEDLAKVAERVRELVPEVKIVTAHGQMPASELEDVMTAFDEGKFEVLLATNIIESGLDIP 898
            V+ + K A  + ELVPE +I   HGQM   ELE VM+ F   +F VL+A+ IIE+G+D+P
Sbjct: 822  VKTIEKCAADLAELVPEARIGIGHGQMRERELEQVMSDFYHKRFNVLIASTIIETGIDVP 881

Query: 899  NANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLSGTAQQRLHVIETLDS 958
            +ANT+I+ RAD FGLAQL+Q+RGRVGRS  + YAYL   P K ++  A++RL  I     
Sbjct: 882  SANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRKQITHDAEKRLEAIANTQD 941

Query: 959  LGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAVASARASMQEGAVAAA 1018
            LGAGF LA++D++IRGAG LLG+ QSGQ++ VG  LY +MLE AV S R   Q       
Sbjct: 942  LGAGFVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKSIRKGEQPNLDQPL 1001

Query: 1019 AAQEWVPQINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDRFGKLPE 1078
                  P+INL  P LIPE+Y+PD+  RL LY+RIA+  D   +     E+IDRFG LPE
Sbjct: 1002 GGG---PEINLRVPALIPEAYLPDVHTRLILYKRIANAADEEALKDLQVEMIDRFGLLPE 1058

Query: 1079 EVENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYIAQHLTLMKLRP 1138
              +NL+ +  +K   +Q  I ++D GP+G  + F      +P  L+  I       K   
Sbjct: 1059 PTKNLVRITLLKLHAEQLGIRKIDGGPQGGRIEFAAETPVDPLTLIKLIQSQPNRYKFEG 1118

Query: 1139 DHKLVYIREWPDPAARVRSVQKLVKDL 1165
                 ++     P  R  +++ L++ L
Sbjct: 1119 ATLFKFMVPMERPEERFNTIEALLERL 1145