Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1149 a.a., Transcription-repair-coupling factor from Pseudomonas lactucae CFBP13502

 Score =  756 bits (1952), Expect = 0.0
 Identities = 456/1135 (40%), Positives = 652/1135 (57%), Gaps = 49/1135 (4%)

Query: 6    LQPGRAGRLLIGGAPEGHDARILAELAQKAGGYGLLHVALDDTRCALLAEALAFFAPKLE 65
            L P  AG+   G  P    +  +AE A  A  + LL  A D      L + L+FFAP L 
Sbjct: 8    LLPAAAGKQHWGNLPGAALSLAIAEAASAAKRFTLLLTA-DSQSAERLEQELSFFAPDLP 66

Query: 66   VLTFPAWDCLPYDRVSPNGGIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAVVQK 125
            VL FP W+ LPYD  SP+  I+++RI +L RL            LA  +++  +   + +
Sbjct: 67   VLHFPDWETLPYDLFSPHQDIISQRIASLYRL----------PELAHGVLVVPITTALHR 116

Query: 126  VPPRSAFKNAVFSAKLRDRIDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGT 185
            + P      +     +  ++D+++++  L  +GY    TV E GEFAVRG ++DLFP G+
Sbjct: 117  LAPTKFLLGSSLVLDVGQKLDVDQMRTRLEASGYRCVDTVYEHGEFAVRGALIDLFPMGS 176

Query: 186  EEPLRLDLFGDELEGVRAFDPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRELFG 245
            + P R+DLF DE+E +R FDP  QR+ DK +S++L P  E  L    + RF++ +RE F 
Sbjct: 177  KLPYRIDLFDDEIETLRTFDPENQRSIDKVESIKLLPAREFPLQKDAVTRFKARFRERFD 236

Query: 246  AVTDDDPLYEAISAGRSYGGMEHWLPLFHESMDTVLDYLPRG--IVSLDHQANEARDARI 303
                  P+++ +S+G +  G+E++LPLF +   T+ DYLP+   + SL      A +   
Sbjct: 237  VDFRRCPIFQDLSSGITPAGIEYYLPLFFDETSTLFDYLPQDTQVFSLPGIEQAAENFW- 295

Query: 304  AQVVDFHASRDGMMTIEKRAGSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFSTPPG 363
                      D     E+R   P    +P A +FL          E   A+L+ +     
Sbjct: 296  ---------NDVRNRYEERRVDPSRPLLPPAELFLP--------VEDCFARLKNWPRVVA 338

Query: 364  IKGTVDAGGKRGHDFAEERNRPDVNVFDAVKDHIRALRAD----GRRVLIAGYSAGSRDR 419
             +  VDAGG  G +    +  P++ +       + AL         RVL    SAG R+ 
Sbjct: 339  SQQDVDAGG--GRERFPAQALPNLAIEAKANQPLEALSNFLGDFPGRVLFTAESAGRREV 396

Query: 420  LSNVLADHGIPGLEPAESMEDVRRFDRGIIGTIVLGMEHGFTSAD--LAVITEQDILGDR 477
            L  +L    +         + V   DR  +   +  ++ G    D  LA+I E  + G R
Sbjct: 397  LLELLERLKLRPKTVDSWPDFVASKDR--LAITIAPLDEGLLLDDPALALIAESPLFGQR 454

Query: 478  LV-RPAKKKRKAAN---FIAEHSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRLI 533
            ++ R  ++KR  AN    I   + L EG  VVH+DHG+GRY GL+TL++     + L + 
Sbjct: 455  VMQRRRREKRADANNDAVIKNLTELREGAPVVHIDHGVGRYLGLQTLEIDNQAAEFLTME 514

Query: 534  YEGGDKLYVPVENIEVLSRY-GSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIA 592
            Y  G KLYVPV N+ +++RY GS+DA   L +LG   WQ  K +  ++++D+A  LL I 
Sbjct: 515  YAEGAKLYVPVANLHLIARYTGSDDALAPLHRLGSETWQKAKRKAAEQVRDVAAELLDIY 574

Query: 593  AERMLKKADPVLTPEGVYQEFAARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGF 652
            A R  ++      P+  Y  F+A F + ET DQ   IE +  D+ + +PMDRLVCGDVGF
Sbjct: 575  ARRAAREGYAFADPKADYATFSAGFAFEETPDQQTTIEAVRADMLAPKPMDRLVCGDVGF 634

Query: 653  GKTEVALRAAFMVAMSGKQVAVVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQ 712
            GKTEVA+RAAF+    G+QVA++VPTTLLA+QH+ +F  RF   PV V  +SR  +A+E 
Sbjct: 635  GKTEVAMRAAFIAVHGGRQVAILVPTTLLAQQHYNSFRDRFADWPVTVEVMSRFKSAKEV 694

Query: 713  TLVKKELAEGTADIVVGTHALLAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVL 772
                 +LAEG  DIV+GTH LL+  +  K LG+VI+DEE  FGV+QKE+LK LR+++ +L
Sbjct: 695  NAAVADLAEGKIDIVIGTHKLLSDDVKIKNLGLVIIDEEHRFGVRQKEQLKALRSEVDIL 754

Query: 773  TLTATPIPRTLQMALSGVRELSLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQS 832
            TLTATPIPRTL MA+SG+R+LS+IATPP  RL+VRTFV+  +   ++EA+LRE  RGGQ 
Sbjct: 755  TLTATPIPRTLNMAVSGMRDLSIIATPPARRLSVRTFVMEQNKSTVKEALLRELLRGGQV 814

Query: 833  FYVCPRVEDLAKVAERVRELVPEVKIVTAHGQMPASELEDVMTAFDEGKFEVLLATNIIE 892
            +Y+   V+ + K A  + ELVPE +I   HGQM   ELE VM+ F   +F VL+A+ IIE
Sbjct: 815  YYLHNDVKTIEKCAADLAELVPEARIAIGHGQMRERELEQVMSDFYHKRFNVLIASTIIE 874

Query: 893  SGLDIPNANTLIVHRADLFGLAQLYQIRGRVGRSKKRGYAYLTYAPNKPLSGTAQQRLHV 952
            +G+D+P+ANT+I+ RAD FGLAQL+Q+RGRVGRS  + YAYL   P + ++  A++RL  
Sbjct: 875  TGIDVPSANTIIIERADKFGLAQLHQLRGRVGRSHHQAYAYLLTPPRQQITSDAEKRLEA 934

Query: 953  IETLDSLGAGFQLASHDMDIRGAGNLLGEEQSGQVREVGVELYQQMLEEAVASARASMQE 1012
            I     LGAGF LA++D++IRGAG LLG+ QSGQ++ VG  LY +MLE AV + R   Q 
Sbjct: 935  IANTQDLGAGFVLATNDLEIRGAGELLGDGQSGQIQAVGFTLYMEMLERAVKAIRKGEQP 994

Query: 1013 GAVAAAAAQEWVPQINLGTPVLIPESYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDR 1072
                        P+INL  P LIPE Y+PD+  RL LY+RIA   D   +     E+IDR
Sbjct: 995  NLDQPLGGG---PEINLRLPALIPEDYLPDVHARLILYKRIASATDEDGLKDLQVEMIDR 1051

Query: 1073 FGKLPEEVENLLDVVTIKRWCKQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYI 1127
            FG LPE  +NL+ +  +K   +Q  I +VDAGP+G  + F      +P  L+  I
Sbjct: 1052 FGLLPEPTKNLVRLTLLKLQAEQLGIKKVDAGPQGGRIEFEAQTPVDPLVLIKLI 1106