Pairwise Alignments

Query, 1213 a.a., Transcription-repair-coupling factor from Azospirillum sp. SherDot2

Subject, 1148 a.a., transcription-repair coupling factor (mfd) from Enterobacter asburiae PDN3

 Score =  741 bits (1913), Expect = 0.0
 Identities = 443/1156 (38%), Positives = 651/1156 (56%), Gaps = 48/1156 (4%)

Query: 25   ARILAELAQKAGGYGLLHVALDDTRCALLAEALAFFAPKLEVLTFPAWDCLPYDRVSPNG 84
            A ++AE+A++  G  +L VA D      L + +  F   L V +   W+ LPYD  SP+ 
Sbjct: 28   ATLVAEIAERHPGPVIL-VAPDMQNALRLHDEIRQFTDSL-VFSLADWETLPYDSFSPHQ 85

Query: 85   GIVARRIDTLTRLIARRDAASNRDGLAPLIVLTTVNAVVQKVPPRSAFKNAVFSAKLRDR 144
             I++ R+ TL +L   +            +++  VN ++Q+V P S         K   R
Sbjct: 86   EIISSRLSTLYQLPTMQRG----------VLIVPVNTLMQRVCPHSYLHGHALVMKKGQR 135

Query: 145  IDLEKLQRYLAGNGYTRAQTVREPGEFAVRGGIVDLFPPGTEEPLRLDLFGDELEGVRAF 204
            +  + L+  L G GY     V E GE+A RG ++DL+P G+++P RLD F DE++ +R F
Sbjct: 136  LSRDALRAQLDGAGYRHVDQVMEHGEYATRGALLDLYPMGSDQPYRLDFFDDEIDSLRVF 195

Query: 205  DPMTQRTTDKRDSVELKPMSEVFLDDAGIARFRSGYRELFGAVTDDDPLYEAISAGRSYG 264
            D  TQRT ++ +S+ L P  E   D   I  FRS +R+ F    D + +Y+ +S G    
Sbjct: 196  DADTQRTLEEVESINLLPAHEFPTDKTAIELFRSQWRDKFEVKRDAEHIYQQVSKGTLPA 255

Query: 265  GMEHWLPLF-HESMDTVLDYLPRGIVSLDHQANEARDARIAQVVDFHASRDGMMTIEKRA 323
            G+E+W PLF +E +  +  Y P   + ++    +A  +R           +     E R 
Sbjct: 256  GIEYWQPLFFNEPLPALFSYFPANTLIVNTGDIDASASRFES--------ETRARFENRG 307

Query: 324  GSPVYKPVPVASMFLDGIGWDALLAERAVAQLQIFSTPPGIKGTVDAGGKRGHDFAEERN 383
              P+   +P  +++L     +A L      QL+          T     K  +     R 
Sbjct: 308  VDPMRPLLPPEALWLRTDELNAELKRWPRMQLK----------TDSLADKAANTNLAFRT 357

Query: 384  RPDVNVFDAVK---DHIRA-LRADGRRVLIAGYSAGSRDRLSNVLADHGIPGLEPAESME 439
             PD+ V    K   D++R  L +    V+ +  S G R+ L  +L    +         E
Sbjct: 358  LPDLAVQAQQKSPLDNLRKFLESFTGPVVFSVESEGRREALGELLGRIKVAPKRILRLSE 417

Query: 440  DVRRFDRGIIGTIVLGMEHGF--TSADLAVITEQDILGDRLVRPAKKKRKAAN---FIAE 494
                    +IG      EHGF  T  +LA+I E D+LG+R+ R  +  R+  N    I  
Sbjct: 418  ATGNGRYLMIGAA----EHGFIDTLNNLALICESDLLGERVARRRQDSRRTINPDTLIRN 473

Query: 495  HSALHEGDIVVHMDHGIGRYDGLETLDVTGAPHDCLRLIYEGGDKLYVPVENIEVLSRY- 553
             + LH G  +VH++HG+GRY G+ TL+  G   + L L Y    KLYVPV ++ ++SRY 
Sbjct: 474  LAELHPGQPIVHLEHGVGRYQGMTTLEAGGIKGEYLMLTYANDAKLYVPVSSLHLISRYA 533

Query: 554  GSEDANVQLDKLGGAGWQGRKARVKKRLKDMAEALLKIAAERMLKKADPVLTPEGVYQEF 613
            G  + N  L KLGG  W   + +  ++++D+A  LL I A+R  K+       +  YQ F
Sbjct: 534  GGAEENAPLHKLGGDAWARARQKAAEKVRDVAAELLDIYAQRAAKQGFAFKHDKEQYQLF 593

Query: 614  AARFPYPETDDQLKAIEDIFTDLGSGRPMDRLVCGDVGFGKTEVALRAAFMVAMSGKQVA 673
               FP+  T DQ +AI  + +D+     MDRLVCGDVGFGKTEVA+RAAF+   + KQVA
Sbjct: 594  CDSFPFETTPDQAQAINAVLSDMCQPLAMDRLVCGDVGFGKTEVAMRAAFLAVENNKQVA 653

Query: 674  VVVPTTLLARQHFRTFSTRFNGLPVRVVQLSRMVTAREQTLVKKELAEGTADIVVGTHAL 733
            V+VPTTLLA+QHF  F  RF   PVR+  LSR  + +EQT + ++ +EG  DI++GTH L
Sbjct: 654  VLVPTTLLAQQHFDNFRDRFANWPVRIEMLSRFRSTKEQTQILEQASEGKIDILIGTHKL 713

Query: 734  LAKGLDFKRLGMVIVDEEQHFGVKQKERLKELRADIHVLTLTATPIPRTLQMALSGVREL 793
            L   + +K LG++IVDEE  FGV+ KER+K +RAD+ +LTLTATPIPRTL MA+SG+R+L
Sbjct: 714  LQSDVKWKDLGLLIVDEEHRFGVRHKERIKAMRADVDILTLTATPIPRTLNMAMSGMRDL 773

Query: 794  SLIATPPVDRLAVRTFVLPYDPVVIREAILREHYRGGQSFYVCPRVEDLAKVAERVRELV 853
            S+IATPP  RLAV+TFV  YD +V+REAILRE  RGGQ +Y+   VE++ K A+R+ ELV
Sbjct: 774  SIIATPPARRLAVKTFVREYDNLVVREAILREVLRGGQVYYLYNDVENIQKAADRLAELV 833

Query: 854  PEVKIVTAHGQMPASELEDVMTAFDEGKFEVLLATNIIESGLDIPNANTLIVHRADLFGL 913
            PE +I   HGQM   ELE VM  F   +F VL+ T IIE+G+DIP ANT+I+ RAD FGL
Sbjct: 834  PEARIAIGHGQMRERELERVMNDFHHQRFNVLVCTTIIETGIDIPTANTIIIERADHFGL 893

Query: 914  AQLYQIRGRVGRSKKRGYAYLTYAPNKPLSGTAQQRLHVIETLDSLGAGFQLASHDMDIR 973
            AQL+Q+RGRVGRS  + YA+L     K ++  AQ+RL  I +L+ LGAGF LA+HD++IR
Sbjct: 894  AQLHQLRGRVGRSHHQAYAWLLTPHPKAMTTDAQKRLEAIASLEDLGAGFALATHDLEIR 953

Query: 974  GAGNLLGEEQSGQVREVGVELYQQMLEEAVASARASMQEGAVAAAAAQEWVPQINLGTPV 1033
            GAG LLGE+QSG +  +G  LY ++LE AV + +A  +       + Q    ++ L  P 
Sbjct: 954  GAGELLGEDQSGSMETIGFSLYMELLENAVDALKAGREPSLEDLTSQQ---TEVELRMPS 1010

Query: 1034 LIPESYVPDLTVRLSLYRRIADLVDRAEVDGFAAELIDRFGKLPEEVENLLDVVTIKRWC 1093
            L+P+ ++PD+  RLS Y+RIA      E++    ELIDRFG LP+   NLLD+  +++  
Sbjct: 1011 LLPDDFIPDVNTRLSFYKRIASAKKENELEEIKVELIDRFGLLPDPARNLLDIARLRQQA 1070

Query: 1094 KQANIDRVDAGPKGLVLAFHDNFYAEPAKLLTYIAQHLTLMKLRPDHKLVYIREWPDPAA 1153
            ++  I +++   KG V+ F +  +  P  L+  + +     +L    +L + +E  +   
Sbjct: 1071 QKLGIRKLEGNEKGGVIEFAEKNHVNPMWLIGLLQKQPQHFRLDGPTRLKFTQELTERKT 1130

Query: 1154 RVRSVQKLVKDLAEMA 1169
            R+  V+  ++ L E A
Sbjct: 1131 RMDWVRNFMRQLEENA 1146