Pairwise Alignments

Query, 259 a.a., Ribosomal RNA small subunit methyltransferase E from Azospirillum sp. SherDot2

Subject, 244 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Rhodanobacter sp. FW510-T8

 Score =  112 bits (280), Expect = 7e-30
 Identities = 88/245 (35%), Positives = 122/245 (49%), Gaps = 16/245 (6%)

Query: 8   RLYVDSPLAEGQSVGLDHERAHFLRHVLRLDRGDSVAVFNGRDGEWRAVIDGFGKGWCSL 67
           R++VD PLA G    L  +    +  VLR+  GD + +FNG   ++ A I   GK    +
Sbjct: 5   RIHVDLPLAAGAERILPAQAGEHVARVLRMAAGDPLTLFNGDGNDYPATILAVGKREVVV 64

Query: 68  TVAEQRREQDTTP-DLWLVFAPLKKGRIDFVAEKATEMGVSRLWPVFTRRTDPNRVNLDR 126
            V       + +P  L L     +  ++D + +KATE+GV+R+ P+ T R +   V LD 
Sbjct: 65  RVDGCHALANESPLPLTLAQGVARGEKMDLIVQKATELGVTRIVPLLTERAE---VKLDA 121

Query: 127 LRAN---------AVEAAEQCERLSVPEMGEAVPLDRALAGWPADRRLYLCAEAGAARPV 177
            RA          A  A EQ  R  +PE+ +A+PL   L G  AD  L L     A R  
Sbjct: 122 ARAEKRLAHWRAVAASACEQSGRARLPEIVQALPLPAWLNGLAADGALRLALLPEAGRSS 181

Query: 178 AEVLRDAPPGPAALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALACWQ 237
            E+   A  G   L+VGPEGG  + +   LA   F   + LGPRILR +TA +AALA  Q
Sbjct: 182 RELRFGAAGG--LLVVGPEGGLGERDAGALAAAGF-EGLRLGPRILRTETAGLAALAALQ 238

Query: 238 SLAGD 242
           +L GD
Sbjct: 239 ALHGD 243