Pairwise Alignments

Query, 259 a.a., Ribosomal RNA small subunit methyltransferase E from Azospirillum sp. SherDot2

Subject, 243 a.a., 16S rRNA (uracil(1498)-N(3))-methyltransferase from Escherichia coli ECRC62

 Score = 88.2 bits (217), Expect = 1e-22
 Identities = 70/242 (28%), Positives = 116/242 (47%), Gaps = 12/242 (4%)

Query: 8   RLYVDSPLAEGQSVGLDHERAHFLRHVLRLDRGDSVAVFNGRDGEWRAVIDGFGKGWCSL 67
           R+Y   PL     + L  + A+ +  VLR+  G ++ +F+G +  + A I    K    +
Sbjct: 5   RIYHPEPLTSHSHIALCEDAANHIGRVLRMGPGQALQLFDGSNQVFDAEITSASKKSVEV 64

Query: 68  TVAEQRREQDTTPDLWLVFAPLKKG-RIDFVAEKATEMGVSRLWPVFTRR----TDPNRV 122
            V E + +   +P    +   + +G +++F  +K+ E+GVS + P+F+ R     D  R+
Sbjct: 65  KVLEGKIDDRESPLHIHLGQVMSRGEKMEFTIQKSIELGVSLITPLFSERCGVKLDSERL 124

Query: 123 N--LDRLRANAVEAAEQCERLSVPEMGEAVPLDRALAGWPADRRLYLCAEAGAARPVAEV 180
           N  L + +  A+ A EQC R  VPE+  A+ L+   A    D  L L     A+  +  +
Sbjct: 125 NKKLQQWQKIAIAACEQCGRNRVPEIRPAMDLEAWCA--EQDEGLKLNLHPRASNSINTL 182

Query: 181 LRDAPPGPAALLVGPEGGFDQSELDELAKLPFVVPVGLGPRILRADTAVVAALACWQSLA 240
               P     LL+GPEGG    E+   A+  F   + LGPR+LR +T  + A+   Q   
Sbjct: 183 --PLPVERVRLLIGPEGGLSADEIAMTARYQF-TDILLGPRVLRTETTALTAITALQVRF 239

Query: 241 GD 242
           GD
Sbjct: 240 GD 241