Pairwise Alignments

Query, 638 a.a., Sensor histidine kinase RcsC from Azospirillum sp. SherDot2

Subject, 1117 a.a., PAS domain S-box protein from Magnetospirillum magneticum AMB-1

 Score =  210 bits (534), Expect = 3e-58
 Identities = 173/541 (31%), Positives = 253/541 (46%), Gaps = 36/541 (6%)

Query: 115 VLNIRDISDHIALSERLRASEARYRTLAEAVPVGILQADSAGQVQFANARLAGITGLEPD 174
           V+ +RDIS+   +   +  SE R+R  A++      +     +    + +    T   PD
Sbjct: 191 VVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLRFTGFSGQFTEHTRTLPD 250

Query: 175 RLLGRGWLDAVHPEDRERVAADWRLDSGCDAAATDFRFH--DPDGTGADRRVLCQRIRLE 232
             +GR   + +  +    V      D        DF +H  + DG G   RV  + +   
Sbjct: 251 HYVGRTRDEMISDDTPAEVRRQNLADMAARRPFRDFVYHTREMDGPGRFLRVNGKPVFDA 310

Query: 233 DG---GTIATITDVSEYVLTANALRLSEA-------RNEAVLDTAADAILTVDEAGVLLS 282
            G   G   T +D++E +     L+ S+A       RN ++L++  D I+ +D  G    
Sbjct: 311 SGEFTGYRGTASDITEEIEAEERLKASQAEIERLAERNNSILESVDDGIVGIDLNGRATF 370

Query: 283 FNRAAEAMFGVAAGDLLWRPLDRLIPLADLREEGGIRLEFAPGQTTALVARDRAAEAERA 342
            NRAA  +      +L+   +   +PL  L      +L     + T  + RD  A  +R 
Sbjct: 371 VNRAAAKLLDFEPAELVGSDI---LPLMALDLHTAEKLYQILLRLTESI-RDDTASFKRR 426

Query: 343 DGIRFPVELSVSASEVEGRRVYTAI-LRDVTERRRAEAELLAAKEAAEAGNQAKSTFIAT 401
           DG   PVE   S     G +V   +  RD+T+RR  E +L  AKEAAEAGN+ KS F+AT
Sbjct: 427 DGSPLPVEYIASPVMDRGNQVGVVLGFRDITQRRLVERQLREAKEAAEAGNRTKSEFLAT 486

Query: 402 MSHELRTPLNAVIGFSQLLETQAGTAVAGGRQNDLVTDCVGAIRQAGEQLLAIIDDILDM 461
           MSHE+RTP+N VIG + LL           R ++        IR +GE LL +I+DILD 
Sbjct: 487 MSHEIRTPMNGVIGMTGLL--------LDTRLSEEQRHFAETIRDSGESLLTVINDILDF 538

Query: 462 ARVDAGGFSLVEGSVNLSALIERVVADLRFHATRQGVTVDVAADGDLPP-IRGDDRRLGQ 520
           ++++AG   L      L  L+E VV  L   A  +G+ +    D  L   +R D  RL Q
Sbjct: 539 SKMEAGKLDLDYTEFELVPLVESVVDILAPRAHAKGIEIASLIDPRLRMLVRSDPGRLRQ 598

Query: 521 ALRNLLSNAIKFSHPGGA---VSLSAGLAADGWVELTVRDRGVGMRQEDVAQALTPFGQI 577
            L NL  NA+KF+  GG    VSL  G  A       VRD G+G+  E   +  + F Q+
Sbjct: 599 VLMNLGGNAVKFTEKGGVSIEVSLLDGPDAPAMARFDVRDTGIGIPPEAQGRLFSMFSQV 658

Query: 578 DQTVTRRHEGIGLGLPLALRLVEAHGGTLTLDSAPGQGCTATIRLPPSRIMTIAELLASM 637
           D +  RR+ G GLGL ++ RL E  GG + ++SA G+G    I LP        ELLA  
Sbjct: 659 DASTARRYGGTGLGLAISRRLAELMGGEVGVESAVGRGSRFWITLP-------LELLAPQ 711

Query: 638 S 638
           S
Sbjct: 712 S 712



 Score = 44.3 bits (103), Expect = 3e-08
 Identities = 31/108 (28%), Positives = 47/108 (43%), Gaps = 12/108 (11%)

Query: 312 LREEGGIRLEFAPGQTTA------------LVARDRAAEAERADGIRFPVELSVSASEVE 359
           LR   G R E+ P    A            + A  R + A R  G  FP+EL+       
Sbjct: 126 LRARRGDRQEYRPPHPLAGLKGEAVSGMNRIFALGRESMARRRGGASFPIELAAGDLTPT 185

Query: 360 GRRVYTAILRDVTERRRAEAELLAAKEAAEAGNQAKSTFIATMSHELR 407
           G   +  I+RD++ER+R E E+  ++E      Q+ S +   M  +LR
Sbjct: 186 GSPQFVVIMRDISERKRIEREMAESEERFRDFAQSTSDWFWEMGPDLR 233



 Score = 27.3 bits (59), Expect = 0.004
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 2/76 (2%)

Query: 540  SLSAGLAADGWVELTVRDRGVGMRQEDVAQALTPFGQIDQTVTRRHEGIGLGLPLALRLV 599
            +L+A + AD  VE+ V+       +++ A AL P G +++   RR      G   +L L+
Sbjct: 1013 ALAADIEADTVVEILVKFMEDARTRQNNAAALAPTGDLEK--VRREAHTIKGAAASLGLL 1070

Query: 600  EAHGGTLTLDSAPGQG 615
                  L L+ A   G
Sbjct: 1071 AVRDACLALEQAARAG 1086