Pairwise Alignments

Query, 598 a.a., 3-methylmercaptopropionyl-CoA dehydrogenase from Azospirillum sp. SherDot2

Subject, 592 a.a., Acyl-CoA dehydrogenase 2 [fadN-fadA-fadE operon] from Pseudomonas sp. S08-1

 Score =  492 bits (1266), Expect = e-143
 Identities = 285/603 (47%), Positives = 367/603 (60%), Gaps = 17/603 (2%)

Query: 1   MTYTAPVDDLRFVLNEVVGLDAI-AALPH-CDSAAPDLVDAILEEAGKFASGVLAPLNRV 58
           + Y AP+ D+RFVLNEV  +  + A LP   +    D   AILEEAGK   GV+APLNR 
Sbjct: 2   LDYKAPLRDMRFVLNEVFDVSKLWAELPGLAEVVDADTAAAILEEAGKVTGGVIAPLNRS 61

Query: 59  GDKEGAKLENGVVRTATGWKEAYGQFTEAGWNSLPFEPEYGGQGLPWTVAFAVNEMWQAA 118
           GD+EG    +GVV+T  G+ EAY  + E GW  +   PE+GG G+P  +   V EM  +A
Sbjct: 62  GDEEGCSWTDGVVKTPAGFPEAYKTYAEGGWVGVGGAPEFGGMGMPKVIGALVEEMVNSA 121

Query: 119 NLSFGLCPLLTQGAVDLLTEHASDEQKAVYLSKMISGEWTGTMNLTEPQAGSDLAAVRTK 178
           NLSF L P+LT GA   +  HAS+E K  YL  M SG WTG+M LTEP AG+DL  +RTK
Sbjct: 122 NLSFALYPMLTSGACLSILNHASEELKQQYLPNMYSGIWTGSMCLTEPHAGTDLGIIRTK 181

Query: 179 AVRAGDGSYRITGQKIFITYGEHDLTENIVHLVLARLPDAPAGIKGISLFIVPKFLPNAD 238
           A    DGSY+I+G KIFIT GE DLTENIVHLVLA+LPDAPAG KGISLF+VPK + NAD
Sbjct: 182 AEPEVDGSYKISGTKIFITGGEQDLTENIVHLVLAKLPDAPAGPKGISLFLVPKVMVNAD 241

Query: 239 GTPGQRNDLRCASLEHKLGIMASPTAVMAYGDDEGAIGYLVGEENRGIEYMFTMMNNARL 298
           G+ G++N L C S+EHK+GI AS T VM +   +GA GYL+GE N+G+  MFTMMN  RL
Sbjct: 242 GSLGEKNSLSCGSIEHKMGIKASATCVMNF---DGATGYLIGEVNKGLNAMFTMMNYERL 298

Query: 299 GVGIQGVAIAERAYQQGRAYARSRVQSKDLADPRGSGVA---IIKHPDVRRMLLDMRAKT 355
           GVGIQG+A+ ER+YQ    YAR R+QS+    P     A   II HPDVRRMLL M+A  
Sbjct: 299 GVGIQGLALGERSYQSAIEYARDRIQSRAPTGPVNKDKAADPIIVHPDVRRMLLTMKALN 358

Query: 356 EAARALALYAGTQLDISRHHEDPAVRAAATARVDVLTPIVKAWSTDIGCEVASTGVQIHG 415
           E  RA + Y   QLD+++H ED   R  A   V +LTP+ KA+ TD+G E    G QI G
Sbjct: 359 EGGRAFSSYVAMQLDVAKHSEDKDTRKRAEELVALLTPVAKAFLTDMGLETTVHGQQIFG 418

Query: 416 GMGFIEETGAAQHYRDARITPIYEGTNGIHGNDLTFRKTGRDKGAAARAFVADMRATVEE 475
           G GF+ E G  Q  RD RIT IYEGTNGI   DL  RK     G   + F  ++++ V  
Sbjct: 419 GHGFVREWGQEQLIRDCRITQIYEGTNGIQALDLVGRKIVGSGGNFYKLFSDEIKSFVAS 478

Query: 476 LGAAPGDDLAVIRTELSAGLDALDRAIDWMVATQAEGDLQGAAAGAVAYLKLWGTVAGGW 535
             A+    LA     L A ++ LD    W++  +A+ +     A +V YL ++G  A  +
Sbjct: 479 ADAS----LAEFAAPLQAAVENLDALTAWVI-DEAKANPNEIGAASVEYLHVFGYTAYAY 533

Query: 536 MLARSAMKAMAGLRQPGANASFLESKLIVARFYAEQVLATAPALLPTIASARNTVMALSE 595
           M    A+ A A L + G +  F  SKL  ARF+  ++L    +L  ++ +   ++  L  
Sbjct: 534 MW---ALMARASLGKEGQD-YFYASKLGTARFFFARLLPRIHSLTASVKAGSESLFLLDA 589

Query: 596 EQF 598
            QF
Sbjct: 590 SQF 592