Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 169 a.a., KEGG: RNA polymerase sigma-70 factor, ECF subfamily from Variovorax sp. SCN45

 Score = 50.8 bits (120), Expect = 2e-11
 Identities = 42/137 (30%), Positives = 68/137 (49%), Gaps = 10/137 (7%)

Query: 27  RLLGSVAEAEDTLQDAWLR-WSAVAPGSVGSAPAYLTTLVTRLALDRLRSARVARERYY- 84
           R LG++  A D  QD ++R  S+   G +    AYLTT+ +R+A    R  R+A ER Y 
Sbjct: 28  RKLGNLDNAADLAQDTFVRILSSNEAGPLREPRAYLTTVASRIAAQYFR--RLALERTYL 85

Query: 85  --GLWLPEPEVAGWDSAPEDGMEPESVPLAMLLLLERLAPDQRAVFVLREAMDLDYAEIA 142
                LPE        +PE  +       A+  +L+ L P  R +F++ +   L Y++IA
Sbjct: 86  EAIAHLPEASA----PSPETRLLVVEALAAVSRVLDGLKPHVREIFLMAQLDGLTYSQIA 141

Query: 143 AMLGKSVEACRQIMRRA 159
             LG ++   ++ M +A
Sbjct: 142 QQLGVTINVVQKAMLKA 158