Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 188 a.a., putative RNA polymerase sigma factor FecI from Pseudomonas sp. DMC3

 Score = 60.5 bits (145), Expect = 3e-14
 Identities = 56/164 (34%), Positives = 76/164 (46%), Gaps = 12/164 (7%)

Query: 11  LAAFAGERARLRALAYRLLGSVAEAEDTLQDAWLRWSAVAPGSVGSAPAYLTTLVTRLAL 70
           L  F  +RA++ AL  R +G  A A D +QD +LR+       V     YL      +A+
Sbjct: 22  LQVFLSQRAQMEALVNRRVGCRATAADLVQDLFLRFWRRPLVQVEELSTYLLRCAGNIAI 81

Query: 71  DRLRSARVARERYYGLWLP-EPEVAGWD--SAPEDGMEPESVPLAMLLLLERLAPDQRAV 127
           D LRS    R R    W P EP+  G +  +A E G +   V  A+  L ER     R +
Sbjct: 82  DHLRS-EGTRTRVNEGWQPDEPDSHGSEPQAALEAGNDLRHVEAALRALPER----TRQI 136

Query: 128 FVLREAMDLDYAEIAAMLGKSVEACRQIMRRA----RARLAEPA 167
           F+L       YAEIA  +G S  A  + M RA    +A L +PA
Sbjct: 137 FLLNRIHGRKYAEIAKAMGLSQSAVEKHMMRALEACKASLRDPA 180