Pairwise Alignments

Query, 301 a.a., ECF RNA polymerase sigma factor SigJ from Azospirillum sp. SherDot2

Subject, 291 a.a., RNA polymerase sigma-J factor from Caulobacter crescentus NA1000 Δfur

 Score =  192 bits (488), Expect = 8e-54
 Identities = 121/284 (42%), Positives = 159/284 (55%), Gaps = 13/284 (4%)

Query: 14  FAGERARLRALAYRLLGSVAEAEDTLQDAWLRWSAVAPGSVGSAPAYLTTLVTRLALDRL 73
           F   R  +  LAYR+LGS AEAED +QDAWLRW  V    V    A+L+ +VTRLALDRL
Sbjct: 8   FETRRRAMTGLAYRMLGSRAEAEDVVQDAWLRWRGVDVSEVQEPAAFLSRVVTRLALDRL 67

Query: 74  RSARVARERYYGLWLPEPEVAGWDSAPEDGMEPESVPLAMLLLLERLAPDQRAVFVLREA 133
           +SAR  RE Y G WLPEP V     A  D      + +A LL LERL P +RA F+L + 
Sbjct: 68  KSARARREVYVGEWLPEPVVDPDFDAGRDA----DLSVAFLLALERLTPLERAAFLLHDV 123

Query: 134 MDLDYAEIAAMLGKSVEACRQIMRRARARLAEPAAWGQPANAADAGRRLADAFAEASVRR 193
            D  +AEIAA LG+S  ACR++  RAR  +       QP  + D  RRL  AF EA +  
Sbjct: 124 FDTPFAEIAATLGRSETACRRLASRAREHVRRDRPRHQP--SVDQERRLTAAFFEAVMTG 181

Query: 194 DYAAIVALLSDDAQWLSDGGGMVRTAVNPLFGADRIARFLIGVQRKRGVSFGFIP--VRV 251
           D AA+  LL+ D    +DGGG+    +NP+ G  +    ++GV+RK       +    RV
Sbjct: 182 DEAALRDLLAQDVVMHADGGGLASANLNPVRGLAKAVALILGVRRKWPPPSATVVRLARV 241

Query: 252 NGGPGLLADLGGAFRSVLAFDMAPCGDTGNRILRVYQIANPEKL 295
           NG PG +  + G+    +  ++    D G RI+ VY + NPEKL
Sbjct: 242 NGQPGFVLAVDGSVFQTVGLEV----DAG-RIVAVYTVRNPEKL 280