Pairwise Alignments

Query, 551 a.a., hypothetical protein from Azospirillum sp. SherDot2

Subject, 700 a.a., DNA packaging protein from Escherichia coli ECRC99

 Score = 71.2 bits (173), Expect = 1e-16
 Identities = 137/570 (24%), Positives = 210/570 (36%), Gaps = 140/570 (24%)

Query: 55  FADEIDGDGWTPGAKTQGDKLKLFWTRGETF-------------WNRKQVRGSTPLLYET 101
           F ++IDG+G          +   F + G T              W R     +TP    T
Sbjct: 177 FPEDIDGEG--DAFSLASKRTTTFMSSGMTLVESSPGRDVKDVKWRRTSPHEATP----T 230

Query: 102 SRVWKLWLASDQRRYFVPCPQCSDAAGQLDGWQYLDWGGPDVPHGLKWSLDAEGTLDKVW 161
           + +  L+   D+RR++ PCP C +         Y    G DV  G +   D      +  
Sbjct: 231 TGILSLYNRGDRRRWYWPCPHCGE---------YFQPCG-DVVAGFRDIADPV-LASEAA 279

Query: 162 YVGTCGCIVEERHKAWMDANGEWRPTARAKVPGHVGMHLWTGMSLNPNAAW------TVI 215
           Y+    C            +G   P  + ++ G  G+ L  G S+N + +       + I
Sbjct: 280 YIQCPSC------------SGRIMPEQKRELNGR-GVWLRDGESINADGSRYGDPRRSRI 326

Query: 216 VQEWLEAQA-----------------------DPASLVQPFMNLRLGRPYRAIYGQEVKS 252
              W+E  A                            ++  +N   G PY      E + 
Sbjct: 327 ASFWMEGPAAAYQTLSQLVYKLLTAEQEYETTGSEETLKTVINTDWGLPYLPRASMEQRK 386

Query: 253 SSFID-RMEPYPAE-VPAGVEFITVGVDVQSGKVNPRLEASVYGWGRGLEVWLIGHFVLA 310
           S  ++ R EP P+  VP GV F+   VDVQ+G+ + R    V G+G   E W+I  + + 
Sbjct: 387 SELLEQRAEPVPSSSVPDGVNFLVATVDVQAGR-HRRFVVQVTGYGSRGERWIIDRYNIT 445

Query: 311 G-------------DPAK-GEVWAALDEGVLLRRFRKPDGTTLDVR--ATCIDSGGHH-- 352
                         DPA   E W  L   V  + +      +  +R  A  +DSGG    
Sbjct: 446 QSLRGDSDGESQRIDPASYPEDWDVLLTDVFHKSWPLASDPSQQMRLMAMAVDSGGEDGV 505

Query: 353 TQEVYAFANKRR----SRRVWAIKGRSESRGQRAKVWPRKPSSKLGHV-----------W 397
           T   Y F  + R     +R++  KG S    +RAK+  R      G              
Sbjct: 506 TDNAYKFWRRCRRDGLGKRIYLFKGDSI---RRAKLITRTFPDNTGRTGRRAQAAGDVPL 562

Query: 398 YMIGGNAARDWAYGSLAVDKIGPRHVHFPQAAIDGARELDDEFFAQLTREKLIVPRGQQY 457
           +++  +A +D    +L  D  GP +VHFP         L   F+ +LT E+         
Sbjct: 563 WLLQTDALKDRVNNALWRDSPGPGYVHFPD-------WLGSWFYDELTYEE-----RSSD 610

Query: 458 TVWVKPSE-AHEAGVCFVYAYAAVCGLQALSGKYVKLGEAEVDAAPAEASSDT------- 509
             W KP   A+EA    VYA A V     L G Y K+   +   AP  AS +T       
Sbjct: 611 GKWSKPGRGANEAFDLMVYAEALV----ILHG-YEKIRWPD---APGWASRETWLESVPD 662

Query: 510 DTEPTPA-DAIAAAVARARRLSQPAVAVQP 538
            TEP+P+ + ++  V + +R       V P
Sbjct: 663 STEPSPSPEPVSTPVKKQKRKKTVTDDVNP 692