Pairwise Alignments

Query, 411 a.a., Putative prophage phiRv2 integrase from Azospirillum sp. SherDot2

Subject, 436 a.a., site-specific integrase from Escherichia coli ECRC102

 Score = 67.8 bits (164), Expect = 6e-16
 Identities = 91/359 (25%), Positives = 145/359 (40%), Gaps = 65/359 (18%)

Query: 82  KAGSIGTSTFYKYRLAVDRYIIPAIGSRRF-NSLSWSDLEAL-------QRGFSKVSPA- 132
           KA  IG++   +Y+ +V + ++P +G  R  +S++  DL  +       ++G  K S + 
Sbjct: 95  KAMEIGSNALNRYQ-SVMKNMLPRLGPGRLASSITKEDLLFIRKDLLTGEKGSRKTSTSR 153

Query: 133 ------TAEGYLTTLKMIEDYAIRRGYTKKRIVRDYRLDFASSKKKKIRIPAIEEILSIL 186
                 T   Y+TT   +  +A   GY +K     +       K K +  P         
Sbjct: 154 KGRTVPTVNYYMTTTAGMFSFAAENGYLEKN---PFNSITPLRKSKPVPDPLTR------ 204

Query: 187 KVVDERPRNYVIRGHMLLRCFVHLAAFCGLRYGEIAGLTKDNIDLDNRIIMVRHSLTSWD 246
              DE  R    R H   +    +A F G+R+GEIA L  ++IDL    I VR + T   
Sbjct: 205 ---DEFSRLIDARHHQQTKNLWTVAVFTGMRHGEIAALAWEDIDLKAGTITVRRNFTKIG 261

Query: 247 ELKEPKTEAGVRNVPIPAHIV----------ALLKEWIEKHQ-----------LINERDL 285
           +   PKT+AG   V    H++          A+L     +HQ           +++E   
Sbjct: 262 DFTLPKTDAGTNRV---IHLLAPAIEALKNQAMLTRLSRQHQITVQLREYGRTILHECTF 318

Query: 286 VF-----RTSTGCPIN-SGNFHTHFWHPLLKRAGLYSTDGDQLHFHALRHFTVSFMLNQG 339
           VF     R +    IN + +     W   +KRAG+ S    Q      RH    + L+ G
Sbjct: 319 VFCPQIVRKNHKAGINYAVSSIGATWDSAIKRAGIRSRKAYQ-----SRHTYACWALSSG 373

Query: 340 IPVTEVSRHVGHSRSDITLNTYAHALANDGQRQEAMDRIADVLLDRARVAPQPTSMERI 398
              T ++  +GHS + +  N Y   +      Q AM  + +VL  RA   PQ    + I
Sbjct: 374 ANPTFIASQMGHSSASMVYNVYGAWMPECSVTQVAM--LNNVLNARAPDVPQSDQEDEI 430