Pairwise Alignments

Query, 706 a.a., Bacteriophytochrome cph2 from Alteromonas macleodii MIT1002

Subject, 896 a.a., Sensory box protein from Pseudomonas putida KT2440

 Score =  306 bits (784), Expect = 3e-87
 Identities = 188/511 (36%), Positives = 301/511 (58%), Gaps = 19/511 (3%)

Query: 201 PSSIRVNELLTDIDAPATFLPALVQRKAPWQGELYWQPVDDYGVWLQVTIHPVLQGD--E 258
           P+   ++ELL D        P+ +     WQGE   +  +    W Q++I  V  GD  E
Sbjct: 392 PALENLSELLFDS-------PSSLAMGNSWQGEFKSRRKNLEPYWGQLSISKVY-GDNRE 443

Query: 259 LTHWVYLLTDITHIHNKEESVLTASGMDSLTKVANRNLFTDTV-RRLVQE-EIAFKLFII 316
           LTH++ +  D+T     ++ +   +  D+LT + NR  F  ++  R  ++ E +  L ++
Sbjct: 444 LTHYIGIYEDVTQTKLAQQRIERLAYTDNLTNLGNRPAFIRSLDERFARDGESSMCLLLV 503

Query: 317 DICDFKKINESLSYQSGDEILKSFALRLQTFVGNSGFIARIGSNEFALVKREDTFNELTS 376
           DI +FK+IN+SL +Q+GD++L S A RL+  + + G +AR  SNEFA++  + +  +   
Sbjct: 504 DIDNFKRINDSLGHQTGDKLLISLARRLRNSLHSGGILARFASNEFAVLLDDTSLED--G 561

Query: 377 AEYMEQLVKKLTQTYTVLNGSEPNLGINIGEANFPRHCPSTESLLQCADIALQAAKYQGR 436
               +QL+  L +   V N    N+  ++G A  P H     SL++ A +AL  AK  G+
Sbjct: 562 QGVAQQLLCTLDKPMFVDN-QLINVTASVGLACAPLHGVDPASLMKNAGLALHKAKANGK 620

Query: 437 NVALTYSEALHKQHHAINELESQLRSAIENNELKLFLQPIVDLETGKIVKCEALARWITS 496
           +    ++E L+ +      +E+ LR A+  NEL +F QP + L +G+++  EAL RW   
Sbjct: 621 HQVQVFTEVLNAEASYKLFVENNLRRALTQNELDVFYQPKLCLRSGRLLGLEALLRWNHP 680

Query: 497 EGKFISPEVFIPLAEKSELIFPFGEWLINAACDAIEALKASNL-DIRLAINISGRQVSDL 555
           E   I P+ FI +AE++ LI P G+W++  AC   + L+ + L ++ +AIN+S +Q SD 
Sbjct: 681 ERGMIRPDQFISVAEETGLIIPIGKWVVRQACCMSQQLRKAGLGNLHVAINLSPKQFSDP 740

Query: 556 ALLNQIKNALEDHQIPGSNLSIELTESVFVESLDTVSVLLNELRAMGITVSIDDFGTGFS 615
            L+  I   L++  +P   L +ELTE + +E+ +     L+EL+A+G+T+++DDFGTG+S
Sbjct: 741 DLVASISTILKEEALPPHLLELELTEGLLLEASEDTHRQLDELKALGLTLAMDDFGTGYS 800

Query: 616 SLVYLKKLPIDELKIDRSFVSELEKNTDDQAIVQAILGLASNLNIKIIAEGIETQQQQQF 675
           SL YLKK PID LKIDRSF++E+  N DD  I  A++ +A NL +K++AEGIET +Q  F
Sbjct: 801 SLSYLKKFPIDILKIDRSFINEIPDNQDDMEITSAVVAMAHNLKLKVVAEGIETPEQLAF 860

Query: 676 LQNHRCAYGQGYLYQRPVAIPEFITLAQKLK 706
           L+ HRC  GQGYL+ RP+   E   LA++LK
Sbjct: 861 LRRHRCDVGQGYLFDRPIPGRE---LAERLK 888