Pairwise Alignments

Query, 365 a.a., tRNA (uracil(54)-C(5))-methyltransferase from Alteromonas macleodii MIT1002

Subject, 444 a.a., 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD from Dickeya dianthicola ME23

 Score = 81.3 bits (199), Expect = 5e-20
 Identities = 57/178 (32%), Positives = 91/178 (51%), Gaps = 15/178 (8%)

Query: 186 FTQPNAEVNCSMIEWALDCVKPLSGD-LLEMYCGAGNFSLPLALHFDNVVGTEIAKPSVQ 244
           F Q N  +N  M+E AL  + P   D +L+++CG GNF+LPLA+   +VVG E     V 
Sbjct: 269 FIQVNDGINQRMVEQALTWLDPQPQDRVLDLFCGMGNFTLPLAVRAGSVVGVEGVAALVD 328

Query: 245 AAQFNIEQNQLNNVKIVRLAAEEFTQAMKGERTFSRLEGIDLSTYNFTTVLVDPPRAGLD 304
             + N  +N L  V         +   ++ + T         +   F  +L+DP RAG  
Sbjct: 329 KGRENARRNGLTQVTF-------YHHDLEADVTLQ-----PWAAMGFDKILLDPARAGAP 376

Query: 305 EDSLRMIQ-DYDNIVYISCNPETLAQNLE-LLSETHDVAQSALFDQFPFTHHIEAGVL 360
               ++++     +VYISCNP TLA++   L++  + +A+ A+ D FP T H+E+  L
Sbjct: 377 GVMPQIVKLAPRRVVYISCNPTTLARDSNVLMAAGYRLARLAMLDMFPHTGHLESMAL 434