Pairwise Alignments

Query, 849 a.a., Excinuclease ABC subunit A from Alteromonas macleodii MIT1002

Subject, 943 a.a., UvrABC system protein A from Acinetobacter radioresistens SK82

 Score =  499 bits (1284), Expect = e-145
 Identities = 284/718 (39%), Positives = 415/718 (57%), Gaps = 53/718 (7%)

Query: 137 NTPEGACEHCDGIGKVFDTQAHRLVPDDSLTIREGAVAAWPGA--WQGKNLVRVLLSLDI 194
           N P GAC  CDG+G      A +L+ +  L+I +GA+  W     +    L +V    D 
Sbjct: 272 NNPFGACPACDGLGTRSHFSADKLIHNPELSISQGAIRGWDRQRPYYYSMLQKVAAHYDY 331

Query: 195 DVDIPWRELPQRTRDWILFTDEMPQLPVYRNYNLAQTRKAQQEGEPASYNGKFISARRHV 254
            ++ PW++L +  +   L+     ++ +             + G   +    F     H+
Sbjct: 332 SLETPWKDLGKDIQKKFLYGTGREKIDL---------SYVDERGRRHNRVMPFEGVLPHL 382

Query: 255 LDTFKTSQKEKMKQRIAPFISVEACPVCRGKKLKQNALAVKVDGLDIIEFSRLPLQQVHE 314
              ++ ++   ++  ++ ++S  AC VC G +L + +  VK+    I + +R+ +     
Sbjct: 383 ERRYRETESNYVRDDLSQYLSNAACDVCDGSRLNEISRNVKILDHTISQITRMSIGDAAH 442

Query: 315 KLQALRKSVNGDTSERGQVIRNITGDLIERVKPIIALGLHYLSLDRSTTSISVGELQRLR 374
             + L          +G++   I  ++ ER+  ++++GL+YLSL RS  ++S GE QR+R
Sbjct: 443 YYEHLHLE-----GAKGEIGDKIFKEIRERLHFLVSVGLNYLSLARSAETLSGGEAQRIR 497

Query: 375 LATQLKSNLFGVVFVMDEPSSGLHPRDVEGLIRALHNITETGNSLLVVEHNPYVIKGANW 434
           LA+Q+ + L GV++V+DEPS GLH RD + L++ L  + + GN++LVVEH+   I+ A+ 
Sbjct: 498 LASQIGAGLMGVMYVLDEPSIGLHQRDNDRLLQTLIRLRDLGNTVLVVEHDEDAIRAADH 557

Query: 435 VVDVGPRAGVNGGELVYSGPVKELASTKNSLTADYVFNNKALS---QRIKC-KSSGVLRL 490
           ++D+GP AGV+GG ++  G   EL   K+SLT  Y+     ++   QR++  K    ++L
Sbjct: 558 IIDIGPGAGVHGGYVIAEGTADELCQHKDSLTGKYLSGELKIAVPQQRVQPPKPEKQIKL 617

Query: 491 KDVSRNNVSHVDIDIPLGVMTCVTGVSGSGKSSLISQALVELVKGGLNSAEKEGVRANET 550
              S +N+ +VD+ IPLGVMTCVTGVSGSGKS+LI++ L+ L    LN A          
Sbjct: 618 LGASGHNLKNVDLTIPLGVMTCVTGVSGSGKSTLINRTLLPLAATQLNGA---------- 667

Query: 551 RETEETKELLTDANSLLTNDTFSHKSEPQQGLIESGLEELSRIVVVDQSPIGRTPRSTLA 610
                         + LT + F             GL+ L ++V +DQSPIGRTPRS  A
Sbjct: 668 --------------TTLTPEKFDSID---------GLQFLDKVVDIDQSPIGRTPRSNPA 704

Query: 611 TYTGIFDQIRSLFASTEEAKSRGYDAGHFSFNVAKGRCSHCEGLGVVSVELLFMPSVYSP 670
           TYTG+F  IR LFA T+EAK+RGY AG FSFNV  GRC  CEG G++ V + F+P +Y P
Sbjct: 705 TYTGVFTPIRELFAQTQEAKARGYSAGRFSFNVKGGRCEACEGDGMIKVAMHFLPDMYVP 764

Query: 671 CTVCNGQRFNDNVLEVGYNEHSIADVLSLTVEEALSVFSGNQVITRGLKTLMNVGLGYLT 730
           C  C+G+R+N   LEVGY   +I+DVL +TVE+A + F    VI R L+TL  VGLGY+ 
Sbjct: 765 CDACHGKRYNRETLEVGYKGKNISDVLEMTVEDAAAFFEAIPVIHRRLETLTQVGLGYIR 824

Query: 731 LGQSATELSGGEAQRIKLASELKRAQNANTLYVLDEPTTGLHLSDTALLMQHLSTLVEAG 790
           LGQSAT LSGGEAQR+KLA EL +     TLYVLDEPTTGLH  D A L+  L  L   G
Sbjct: 825 LGQSATTLSGGEAQRVKLARELAKRDTGKTLYVLDEPTTGLHFHDIAKLLDILHELRNKG 884

Query: 791 NTVVMVEHNMQVAGACDYIIDMGPGAGDEGGEIVAEGRPEEVAKVQRSATAPFLKASL 848
           NT+V++EHN+ V    D+++D+GP  G  GG+I+A G PEEVA+V  S T  FLK  L
Sbjct: 885 NTIVVIEHNLDVIKTADWVVDLGPEGGSGGGQIIATGTPEEVAEVAISHTGRFLKPLL 942



 Score =  144 bits (363), Expect = 2e-38
 Identities = 67/117 (57%), Positives = 94/117 (80%)

Query: 4   NEGKIHVRGARVHNLKNISIDIPRNEVVVFTGVSGSGKSSLAFGTLYAEAQHRYLDSISP 63
           ++  I +RGAR HNLKN+S+DIPR++ VV TG+SGSGKSSLAF TLYAE Q RY++S+S 
Sbjct: 2   SQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLYAEGQRRYVESLSA 61

Query: 64  YARRLIEQVEKPDVDAIDGLPPAVGLHQRRGAPSVRSSVGSITTLSNSLRMLYSRAG 120
           YAR+ + Q+EKP+VDAI+GL PA+ + Q+  + + RS+VG+IT + + LR+LY+R G
Sbjct: 62  YARQFLSQMEKPEVDAIEGLSPAIAIEQKSTSHNPRSTVGTITEIYDYLRLLYARVG 118



 Score = 57.4 bits (137), Expect = 4e-12
 Identities = 49/152 (32%), Positives = 73/152 (48%), Gaps = 16/152 (10%)

Query: 5   EGKIHVRGARVHNLKNISIDIPRNEVVVFTGVSGSGKSSLAFGTL--YAEAQHRYLDSIS 62
           E +I + GA  HNLKN+ + IP   +   TGVSGSGKS+L   TL   A  Q     +++
Sbjct: 612 EKQIKLLGASGHNLKNVDLTIPLGVMTCVTGVSGSGKSTLINRTLLPLAATQLNGATTLT 671

Query: 63  PYARRLIEQVEKPD-VDAIDGLPPAVGLHQRRGAPSVRSSVGSITTLSNSLRMLYSRAGD 121
           P         EK D +D +  L   V + Q     + RS+  + T +   +R L+++  +
Sbjct: 672 P---------EKFDSIDGLQFLDKVVDIDQSPIGRTPRSNPATYTGVFTPIRELFAQTQE 722

Query: 122 -YPKGQSIVYADGLSPNTPEGACEHCDGIGKV 152
              +G S   A   S N   G CE C+G G +
Sbjct: 723 AKARGYS---AGRFSFNVKGGRCEACEGDGMI 751



 Score = 54.3 bits (129), Expect = 3e-11
 Identities = 38/141 (26%), Positives = 59/141 (41%), Gaps = 27/141 (19%)

Query: 484 SSGVLRLKDVSRNNVSHVDIDIPLGVMTCVTGVSGSGKSSLISQALVELVKGGLNSAEKE 543
           S   +R++    +N+ +V +DIP      +TG+SGSGKSSL    L              
Sbjct: 2   SQSHIRIRGARTHNLKNVSLDIPRDKFVVITGLSGSGKSSLAFDTLY------------- 48

Query: 544 GVRANETRETEETKELLTDANSLLTNDTFSHKSEPQQGLIESGLEELSRIVVVDQSPIGR 603
                      E +    ++ S       S   +P+   IE     LS  + ++Q     
Sbjct: 49  ----------AEGQRRYVESLSAYARQFLSQMEKPEVDAIEG----LSPAIAIEQKSTSH 94

Query: 604 TPRSTLATYTGIFDQIRSLFA 624
            PRST+ T T I+D +R L+A
Sbjct: 95  NPRSTVGTITEIYDYLRLLYA 115